Conserved Protein Domain Family
PBP1_ABC_ligand_binding-like

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cd19982: PBP1_ABC_ligand_binding-like 
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions
This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Statistics
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PSSM-Id: 380637
Aligned: 23 rows
Threshold Bit Score: 376.236
Created: 17-Jul-2018
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic Leu/Ile/Val-binding protein with bound valine

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
KIE41963   26 KIGVINsmtgpeapIGENLTNGIKLAQedlkk----kginADLVWEDDtgkpQIAMSAMEKLATrdgVAGVVGpytsacs 101 Geobacter soli
OLV17908   25 KIGAITslsgrfatFGAMQQAGFKVAIdelnakggvngqkLELLLEDDasdtNKALNAAEKLVNq-kVPVIIGayssgit 103 Deinococcus marmoris
BAU47829   27 KIGAPQpmtgpdapFGDKFQKAYSMAVeeinaaggvngkqIEVIIEDHqaknPLAATVAERLIQqreVLILTGgrasgqa 106 bacterium skN76
ALS25193   48 KIGAVLpmtggsavFGEKFKQAYSLAVeeinaaggingkkLEIIIEDSqekpQVGKTATEKLVAnkdILLLTGgrssgvt 127 Paenibacillus naph...
KJS46469   43 KIGAVLpltggsavFGEKFKQAYSLALeeinakggvkgkkLEIVYEDSqekpAVGKTAAEKLVSnkdILILIGgrssgvt 122 Peptococcaceae bac...
SEJ48613   23 KIGAITsvtgrfaeFGKMQVAGFKVGVeevnrkggiggrkIELIIEDNasdvNKGLAAAERLVNa-gVPIVLNeyssslv 101 Deinococcus reticu...
OGP95729   28 KIGAPQpmtgpdapFGSKFKKAYDLALeeintkggvhgkkIEVIIEDHqaknPMAATVTEKLITqykVLALTGgrasgqa 107 Deltaproteobacteri...
OZI24133   30 KVGVINslsgnfaaFGQRYNTGMQVALeeinanggingqkLELIVQDDrsdaQSALAAVESLNKq-gVPLIIGsyasgit 108 Bordetella sp. AU1...
OLE14016   33 RLGAISsltgsfatFGSMERAGYALAVddintaggingrpLLIDLQDDtsnaNTALTVAEQFIRs-gVPLVLGaysssit 111 Armatimonadetes ba...
KFG67556   25 EVGVINslsgnfaaFGERYRTGLQVALdeinanggikgqqLTLTIQDDrseaKSALAAAESFASk-dVPLVIGsyassit 103 Microvirga sp. BSC39
Feature 1                      ##                                                             
KIE41963  102 navsklaerYKVPLLVPAAakeeitrqglkwVYRLNAPAdQYAASLIDAATglg------kpkTIAFIYENTdfGTSTVK 175 Geobacter soli
OLV17908  104 kplsqylarVKVPLLVATAidetitkpgnpyTFRVNNQSsVYTRSLIDELKrig------gmkTAVVLTSNDafGKSVLT 177 Deinococcus marmoris
BAU47829  107 veiasiaqrLKTPYLVDHPsadiitakgfewVFRNNPTGsIYPQAFNKFISeapg----ampkSAAVIYDNTvfGKTIAN 182 bacterium skN76
ALS25193  128 lveaqvaneNKIPYLIDHGssdkatmsdydyVFRLSPTAgMYTSALRDYFQtnp-------pkSIAYINVDNafGEAVYE 200 Paenibacillus naph...
KJS46469  123 lqeaavaeeNKVPYLIEHGssdlatigdkkyVFRLNPTSgMYTETLRKMFKenp-------pkSIAYVNVDNafGEAAYQ 195 Peptococcaceae bac...
SEJ48613  102 kaqaqylarQKVPNLVITSsgdditkpgndyIFRLNQPAtEYARVILDIFRank-------fkSMAIIAGTGafEKSVAD 174 Deinococcus reticu...
OGP95729  108 veiasvaqrLKTPYVVDHPsadiitskgfewVYRNNPTGsIYPQAFNKFISevpg----ampkSASVVYDNTvfGKTIAN 183 Deltaproteobacteri...
OZI24133  109 gpmsklasrQKIPLIVLGSaddsitkpgspwVFRAKHNStIVANVYFDYFDylrks--ngdlkKIAIMHDNGawPTSVSE 186 Bordetella sp. AU1...
OLE14016  112 kplavymarQRVPLLNSNSaddsitkpgsdyVFRVGQNTdAYVKPLFALFKqlg------gikTIAILVSNNalGHSVEN 185 Armatimonadetes ba...
KFG67556  104 gplaqfltrQKVPMIVLGSaddsitkpgspwVFRAKHNStIVGKAYFDYFDylkntkkdvpleTVAMLYGNGawPTSLAK 183 Microvirga sp. BSC39
Feature 1                                                                                     
KIE41963  176 AAKEYVakkgiqivADESYskgspdyRSTLTKVKAknpdLVFMVsyv-adAILLMRQSREIglkPQAFLGggagfttsqf 254 Geobacter soli
OLV17908  178 DATKLLpaagftvlSKDTYdkgltdfRPLLNRYKGqnpdVVIFAsye-edAVALAKQVKEVglaPRIISGiatgfalpdf 256 Deinococcus marmoris
BAU47829  183 SAMTFLksknvnivNDEAYpvntldfKPIMTKVRGnnpdYVLMVavattdAILMTRHAKEMglkPRAFVGfgggfgvedf 262 bacterium skN76
ALS25193  201 YGIKKYtdsagipfTLEKYkageldfKPLMEKIKAanpeVVIVTagddndATQIMKAAKESrlsPKMFVGtgaghsiigf 280 Paenibacillus naph...
KJS46469  196 YGLKGYfeeskvpvTIEKYkageldlKPVMEKVKAqnpeVVIMTagddndATQLIKAAKEAnlsPKYFIGtgaghsiigf 275 Peptococcaceae bac...
SEJ48613  175 AAGRIAkdygitvlEDQRYdkgltdfRPVLNRIKAknpdGLLMVsya-edSVALMRQAREVgvkPRLFAGgaagfalpef 253 Deinococcus reticu...
OGP95729  184 SAMVFLksknvpivNDEAYpvntldfKPLMTKVKAqnpdFLLMVavsttdAILLTRQAKEMgvaPRAFVGfgggfgvadi 263 Deltaproteobacteri...
OZI24133  187 EGARQAekrgyeivGKQAYdqgttdfRPILNKFRAdepdILLTSsya-ddGIAIARQIKEVg-lNAQVVAidtassmisf 264 Bordetella sp. AU1...
OLE14016  186 SLVTQAkdgdyqvvFDQAYdegltdfRPVLNRIRDigadVLAMSsye-adAVALMRQIKEVnlnAKVFAGagatgfaips 264 Armatimonadetes ba...
KFG67556  184 EGKRLAsergykvvGDQSYdqgvtdfRPILNRFRGanpdILYIVsya-edGVAITRQMREVglnAKVIAIdtsaalpsfv 262 Microvirga sp. BSC39
Feature 1                                                                                     
KIE41963  255 --anekaisnyVLSCTQWtddvnwpgaadfa-krykakfgkeptyHAACAYEAMMIMAqtaaaangdrektraglka--- 328 Geobacter soli
OLV17908  257 -lkgagstaenFLVTMVWnadvkypgaaslntrlkaalngeepsqHAAQSYAAMLAAAdaikrggtdpekvrvales--- 332 Deinococcus marmoris
BAU47829  263 -akqlgplsenVFSSAAWsgnpndpkvkafy-ekfnkkygiypkeHEVEGYAAIYIIAdamkrakltgdvakdrdairra 340 bacterium skN76
ALS25193  281 -aqqsgelaetVLTAGPWhgnkkdpkfqefh-knftakfqhepgeHEVEGYAAIYVIAdalkraktldregvkealea-- 356 Paenibacillus naph...
KJS46469  276 -akqagalsntVLTAGPWhgnkkdpkwqefn-kkftekfahepgeHEVEGYAAIYVIAdtlsrtknldregvrealaq-- 351 Peptococcaceae bac...
SEJ48613  254 -vkdagsaannVVTATAWipqlryagvqklnvdlkkalggndpsyHAAQAYAGVIVAAeairragstdrekvkaalns-- 330 Deinococcus reticu...
OGP95729  264 -atelgplsenVFSSAAWsgnpndpatkafy-kkfhdkynfypkeHEVEGYAIIYIIAdalkrakltgkleedreairqa 341 Deltaproteobacteri...
OZI24133  265 -iqqvgpqsenIVSAVSWspdvkyegtpely-erlkakakeepsfYEAEGYLALTVAAdalrrakstdrekvrdalag-- 340 Bordetella sp. AU1...
OLE14016  265 flkgggeaveyVITSAAWspdvhyprahelfarlkafmggvepsyHAIRSYAGATVAAdalrrataltpegiretlla-- 342 Armatimonadetes ba...
KFG67556  263 --qqvgksadyVATAVSWsqdvkypgaqely-erlkakaggepsfYEAEGYLALMVAAdalrradpksrdsvrdalaa-- 337 Microvirga sp. BSC39
Feature 1                                                
KIE41963  329 --------gkwngimgdvkfedyagftNQNNHQM---LVQQIL 360 Geobacter soli
OLV17908  333 --------tklntafgpvtfrdyagyqNQNSVVG---LITQVQ 364 Deinococcus marmoris
BAU47829  341 llktdmetvfgkvkfgnykgplgdpytNQNVNSPehsVLAQWR 383 bacterium skN76
ALS25193  357 --------tdletvfgrvkfedfdgykNQNKGMT---DISQWI 388 Paenibacillus naphthalenovorans
KJS46469  352 --------tdmdtifghikfekfgsysNQNKAIT---DVSQWI 383 Peptococcaceae bacterium BRH_c23
SEJ48613  331 --------lnmqtafgpiqfkdfdgfkNQNPLAM---VAQQVQ 362 Deinococcus reticulitermitis
OGP95729  342 llktdmttvfgkvkfgnyagplgdqytNQNIYSPehsVLAQWR 384 Deltaproteobacteria bacterium RBG_16_47_11
OZI24133  341 --------tdlktpvtdvtfkdydgfkGQNPIKS---VIIQIQ 372 Bordetella sp. AU18089
OLE14016  343 --------trlttpfgtvefkdfngfhNQNPLPS---ILMQVQ 374 Armatimonadetes bacterium 13_1_20CM_4_65_7
KFG67556  338 --------tdittpvttvnfksadgfqGQNPIRS---LILQIQ 369 Microvirga sp. BSC39

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