3G1W


Conserved Protein Domain Family
PBP1_ABC_sugar_binding-like

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cd19969: PBP1_ABC_sugar_binding-like 
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monosaccharide ABC transporter substrate binding protein
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Statistics
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PSSM-Id: 380624
Aligned: 15 rows
Threshold Bit Score: 315.816
Created: 26-Jun-2018
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative ligand
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic transport protein receptor for D-glucose and D-galactose
  • Citation:PMID 8161535

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 #                                                                   
3G1W_A      6 TYXXITfqsgxdYWKRCLKGFEDAAqa------lNVTVEYRGaaq--ydiQEQITVLEQAIAkNPAGIAISaidpveltD 77  Bacillus haloduran...
AAW61954   35 RFVLIPktv-hpWFDKANNGAQAAAtmisqatgrKVEIEYRApqt--advSSQNDIIERAIAtHPDGLILDlldekgnrA 111 Gluconobacter oxyd...
PIO96737   41 LEIVFIpkvihpWYDVVEQGAKASVaef---eklGVKVNVRFdapptadiNEHIKKIENNSAvHPDGLAVAcldpatdtQ 117 Pleomorphomonas sp...
OHV08450   38 YRFGGVpkvvhpWFDKVNEGAQQAAaaikaqtgtEVKIQYSApqs--asvSEQNQIIERAIAtRPDGLIIDlldpngnrS 115 Kushneria sp. YCWA18
AOH43088   72 YNFVFIpklvhpWYETVKVGIEKAIeef---aerGITINYSWdatstadvLAQTQKLESAAAkNPDGISIAiidasvttA 148 Anaerolineaceae ba...
OHB83978  368 HYVMISaatgapYWIDAKLGLNDKAne------lGVSAVFTGppt--vdvNQQIDAVNRAIAqGVDGIIVVpmad-svtP 438 Planctomycetes bac...
CUO26753   57 YIQVSAlgs-dpYFYDHKMGMEMAGee------lGVRTEFVGpae--ldmNAMVTAFEQAIAkKPNGIVVVgfne-qltP 126 Eubacterium contortum
KKI51936   74 YHIYATyklihnWYDAIKTGADAAIaela-eqgiTVQFDWEApvt--pdaLDQVNRIESAVAkNPDLIAVDisqedtttT 150 Catabacter hongkon...
CCH56625   44 YVMVTTavtmpmYVNHDQATFKRWGqe------rGVKVSILGpae--wdvPAQINTIEEVIGtRPAGLLINgtdp-aiaP 114 Fibrisoma limi BUZ 3
KJS50597   56 TIGMNIni---pYWQDHKKGLEAAAae------lGVKAVFTGeng--ndaANQINIFEQVLAkKPAGILVSpidpegmiP 124 Peptococcaceae bac...
Feature 1                    #                                                      #         
3G1W_A     78 TINKAVDaGIPIVLFDsgapd--shahsFLGTNNy-nAGXNAAYKXAelldgeGEVAVITLpnq-lnHQERTTGFKETle 153 Bacillus haloduran...
AAW61954  112 TMDEAVDeKIPMTVFDslppe--gmditAVGADFc-eQGTMAAERLAnlvgkkGEVAIMMGvptapnHTLRAECEKKVfa 188 Gluconobacter oxyd...
PIO96737  118 AINDAINaGIKVATFDtdcpd--skrimYVGHNRdeqDGYDLGKFLAervggkGKVGILSGslsapnHKARVEGFKKAia 195 Pleomorphomonas sp...
OHV08450  116 VLRDASSqGIPVTLFDssnpe--gmnltTVGSDFc-eQARMAANRLVelldgeGQVAIMMGvptapnHAERARCARDVfe 192 Kushneria sp. YCWA18
AOH43088  149 IIDDLVAnGINVSTFDtdape--sdrlsYCGHADnkgDGAALAKILAakigeeGEIAILSGtlsapnHKERVEGFKEEia 226 Anaerolineaceae ba...
OHB83978  439 AIDKAVEaGIPVVCADadaps--skrfcFVGTGNy-nAGYEGGQRLGkllggrGKVALISLpgt-dhLARRVNGYRDAla 514 Planctomycetes bac...
CUO26753  127 TIKKAMDaGIPVVTVDadlpd--sgriaFVGTGNv-eAGITGGEKMKellgdsGKVAIMYNpgq-tnLEERVAGYKQAfe 202 Eubacterium contortum
KKI51936  151 AINNAVKaGIPVMTFAgsdlpnsertafVGNLDNe-gDGYALAVALFeamggkGKVATLEGtigapsHEQRIEGFNRAle 229 Catabacter hongkon...
CCH56625  115 VINKAVAaGIPTVVYDsdipn--snrhaFLGTDWy-eIGKMQGEEMArllngkGKVAYMGIlgl-tnMEDGFRGLLDVfk 190 Fibrisoma limi BUZ 3
KJS50597  125 AINKAIEaGVPVVCIDsdapk--skrltYFGTGNy-eAGYAAADILAkaigekGEVGLLTIpgi-fcLDERQRGFEQRik 200 Peptococcaceae bac...
Feature 1                                                                        #            
3G1W_A    154 aefpaievIAVEDGRGdsLHSRRVAHQLLEdypnlaGIFAteangGVGVGDAVRLEsrageIQIISFDtdkgtldlvdeg 233 Bacillus haloduran...
AAW61954  189 kyp-dmkvVATGVDNDsiETAQKQASAIMQahpdlvGWVEcdasgPVGVGQAIRESgktgkVKEVGLDnlndmiqlikdg 267 Gluconobacter oxyd...
PIO96737  196 eyp-dmsvAFDRPDNDnlQAAIDLTENALQsnpdlvGMFGsnasaPVGAARAVETAglvgkVHIVGMDdlpeaidfvkkg 274 Pleomorphomonas sp...
OHV08450  193 stk-gievVATGVDNDdiNTAQQQASAIMQanpgidGWVAsdaagPVGIGQAIKEAgktgkVKLVGLDdlnqmlalireg 271 Kushneria sp. YCWA18
AOH43088  227 nyp-nikiVAEYPDEDslEKAISLTESILQgnpnlsGIFGcnatnVYGAARAVVDAglkdqIIIVGMDdepetisgiedg 305 Anaerolineaceae ba...
OHB83978  515 qyp-gieiVRVGNDQGspNEAQKECRAILQavpglaGFGCvdaagGQGAAVAVKQAgkvgiVKIVAMDrdeatlqfiqeg 593 Planctomycetes bac...
CUO26753  203 gt--gieiIEEVDTKQdsVIAAQNIAAVLQkhpdlnGIVCvdatgGTAAATAVREAgrtgdVKIIAMDrsneileaiedg 280 Eubacterium contortum
KKI51936  230 eyp-eievVDRQRDEDlvEKAVQITESYIQkhpdlgGIWCnnasnPVGAAQAVQDAgksgeILIAGMDhdlrtl-sylde 307 Catabacter hongkon...
CCH56625  191 kyp-gievIGKYDDKAnvEEAARITSDLLAahpdlaGLCGfdsnsGPGMALSVREAgkagkVKITTVDwepehlqlvrng 269 Fibrisoma limi BUZ 3
KJS50597  201 dkysniklVSVQNDEGdpTKAASVTSQMLQakpnlvGLFGddaasGVGAAAALREGnklgkIKVVAFDkdsavldlveqg 280 Peptococcaceae bac...
Feature 1            #                                             
3G1W_A    234 IISATLAQGtWNXGYWSLTYLFhlhhgltepqi-lqtreeaplpLYVDTgITI 285 Bacillus halodurans C-125
AAW61954  268 VAESSASSRpEMQGYWAVVSAWqramg-------------qktpKYIDTgIDL 307 Gluconobacter oxydans 621H
PIO96737  275 VIDGQKAQRqWEIGYWTVKYFVamaeg-------------htfpKEHATgSQL 314 Pleomorphomonas sp. SVCO-16
OHV08450  272 VADSSSASRpTMQGYWAVINMWqhatg-------------avtpDHIDTgNVM 311 Kushneria sp. YCWA18
AOH43088  306 SIYATMVQNvKEIGYRSIFTMIqiadg------------vlpelKEDEVgAFL 346 Anaerolineaceae bacterium oral taxon 439
OHB83978  594 IIDASIGQRsYMMSYLALQMLYdlrnerikfvndwqqigvnplpTNVDTgSFV 646 Planctomycetes bacterium RBG_16_64_12
CUO26753  281 IISASVAQQtALMPYYATQLLInlnnskveitsdnaaagvlgvpGYIDTgAII 333 Eubacterium contortum
KKI51936  308 GVITAAQIQnCYDMGYFLIKNAikvi--------------dgvePGDDTyPEI 346 Catabacter hongkongensis
CCH56625  270 VIQMLAGQKrELFTWYGAQFLYdmvhqtnrlsandakagltnvpYEINTgLIK 322 Fibrisoma limi BUZ 3
KJS50597  281 SIEATMVQRtFTMSYYALKFLNdynnksvkma--tdmkginplpQLVDTgIMV 331 Peptococcaceae bacterium BRH_c23

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