5DV7,2DMY


Conserved Protein Domain Family
DSRM_STRBP-like_rpt1

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cd19894: DSRM_STRBP-like_rpt1 
first double-stranded RNA binding motif of STRBP, ILF3 and similar proteins
This family includes spermatid perinuclear RNA-binding protein (STRBP) and interleukin enhancer-binding factor 3 (ILF3). STRBP is a double-stranded DNA and RNA binding protein that is involved in spermatogenesis and sperm function. It plays a role in regulation of cell growth. ILF3 (also known as double-stranded RNA-binding protein 76 (DRBP76), M-phase phosphoprotein 4 (MPP4), nuclear factor associated with dsRNA (NFAR), nuclear factor of activated T-cells 90 kDa (NF-AT-90), or translational control protein 80 (TCP80)) is an RNA-binding protein that plays an essential role in the biogenesis of circular RNAs (circRNAs) which are produced by back-splicing circularization of pre-mRNAs. Members of this STRBP/ILF3 group contain an N-terminal DZF domain and two double-stranded RNA binding motifs (DSRMs). This model describes the first motif. DSRM is not sequence specific, but highly specific for dsRNAs of various origin and structure.
Statistics
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PSSM-Id: 380723
Aligned: 3 rows
Threshold Bit Score: 136.36
Created: 24-Oct-2018
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
RNA binding
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on structure evidence that Rattus norvegicus RED1 (2L3J) binds dsRNA.
  • Structure:5DV7; Mus musculus ILF3 binds dsRNA, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  ##  ## #             ## # #                ###  #           
5DV7_C       400 MNALMRLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGsNFEASGPSKKTAKLHVAVKVLQDM 462 house mouse
2DMY_A        19 MNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGtTYEASGPSKKTAKLHVAVKVLQAM 81  human
NP_001025236 460 PNALMKLNQLRPGTVYKLASQTGPEHEPQFSMTVEVDGvTYEATGPSKRSAKLHVAQKVLVAL 522 zebrafish

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