Conserved Protein Domain Family
DSRM_A1CF-like

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cd19872: DSRM_A1CF-like 
double-stranded RNA binding motif of APOBEC1 complementation factor (A1CF), RNA-binding protein 46 (RBM46) and similar proteins
The family includes two dsRNA-binding motif-containing proteins, A1CF and RBM46. A1CF (also known as APOBEC1-stimulating protein) is an essential component of the apolipoprotein B mRNA editing enzyme complex which is responsible for the posttranscriptional editing of a CAA codon for Gln to a UAA codon for stop in APOB mRNA. A1CF binds to APOB mRNA and is probably responsible for docking the catalytic subunit, APOBEC1, to the mRNA to allow it to deaminate its target cytosine. RBM46 (also called cancer/testis antigen 68 (CT68), or RNA-binding motif protein 46) plays a novel role in the regulation of embryonic stem cell (ESC) differentiation by regulating the degradation of beta-catenin mRNA. It also regulates trophectoderm specification by stabilizing Cdx2 mRNA in early mouse embryos. Members of this family contain three RNA recognition motifs (RRMs) and a C-terminal double-stranded RNA binding motif (DSRM) that is not sequence specific, but highly specific for dsRNAs of various origin and structure.
Statistics
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PSSM-Id: 380701
Aligned: 17 rows
Threshold Bit Score: 89.2718
Created: 24-Oct-2018
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative RNA
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on structure evidence that Homo sapiens TARBP2 (5N8L) binds siRNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         # ##  ##  ##    ##                # #                           ####  ##        
Q9NQ94        446 LAPQILEEICQKNNWGQPVYQLHSAigq---dqrQLFLYKITIPalasq--npaiHPFTPPKlsAFVDEAKTYAAEYTLQ 520  human
Q8TBY0        393 SAVMHLDYYCNKNNWAPPEYYLYSTtsq---dgkVLLVYKIVIPaian----gsqSYFMPDKlcTTLEDAKELAAQFTLL 465  human
KFD70219      502 HYGDMLDEYCKQNNWGSPRYSLNSTsqdg-pdsiKLYSYNVEIPslt-----aacGLFQVDQmvPDKQEAREVAAQHVLG 575  pig whipworm
XP_023343969  347 SAPDILLDICHSNRWGEPIYSLSVTvpge--gamKMYIYKVTIPnypf---qhphNVFQTYNlkPTPEEARLEAAQFVLA 421  Eurytemora af...
XP_020999878  316 NPVQMLSDICLSNGWGMPVYNHHVTeasv-snpfATHSVKVYIPnip-----yveKQFTPPGyfFSPSEAQCCSALFVLT 389  common house ...
KDR17195      134 RAPEVLSEYCQKNNWGEPFYNLMAIpsv---qedKQYMCQVTIPqhp-----ggqLQFQTPKvsSSAEGAKVLAAEITLS 205  Zootermopsis ...
KFM60609      179 RPVQLLYYICLENGWGEPLFQVSHVdsd---pceLFFVCWVIIPgcp------fgRRFMSDKisRTPEEAKLYAACHVLK 249  Stegodyphus m...
ESO07098       67 SAAQILEEICFARGWGQPEYKYAEVivleggkecIQYISQVTIPmla-----nngLYFSPSSpcRSKEESFMLAAFTVLT 141  Helobdella ro...
RDD44692      217 NPVQILEEFCAKNQFPAPTYHLVPIygp---ndvQLFSHKIFVNg---------vLIAQSEKfcRTLEESKVLTADLAVQ 284  Trichoplax sp...
ORX84026       59 TPLSLLHEHCQKNGWGKPSLNVLKTs--------GKFQCHITLFkkdqktgenrrVTFSCDKicDTEQEAKQYCATYTLY 130  Anaeromyces r...
Feature 1            
Q9NQ94        521 TLG 523  human
Q8TBY0        466 HLD 468  human
KFD70219      576 QLG 578  pig whipworm
XP_023343969  422 CLR 424  Eurytemora affinis
XP_020999878  390 KLG 392  common house spider
KDR17195      206 HMS 208  Zootermopsis nevadensis
KFM60609      250 KFG 252  Stegodyphus mimosarum
ESO07098      142 QIG 144  Helobdella robusta
RDD44692      285 QIG 287  Trichoplax sp. H2
ORX84026      131 RVN 133  Anaeromyces robustus

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