Conserved Protein Domain Family
UBR-box_UBR4

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cd19680: UBR-box_UBR4 
UBR-box found in RING-type E3 ubiquitin-protein ligase UBR4 and similar proteins
UBR4 (EC 2.3.2.27; also called 600 kDa retinoblastoma protein-associated factor, N-recognin-4, retinoblastoma-associated factor of 600 kDa, RBAF600, p600, or zinc finger UBR1-type protein 1) is a RING-type E3 ubiquitin ligase of the Arg/N-end rule degradation pathway. It recognizes and binds to proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. UBR4 acts as a multifunctional protein with roles in anoikis, viral transformation, and protein degradation, as well as in neurogenesis, neuronal migration, neuronal signaling, and survival.
Statistics
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PSSM-Id: 439078
Aligned: 22 rows
Threshold Bit Score: 129.885
Created: 28-Sep-2018
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putative Zn
Feature 1:putative Zn binding site [ion binding site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens UBR6 binds several Zn2+ ions through its UBR-box.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                            #  #        #  #   ##  #           # #            #      
Q5T4S7       1660 KLCTFTITQKeFMNQHWYHCHTCKMvDGVGVCTVCAKVCHKDHEISYAKYGSFFCDCGAKEDG-----SCLALVKR 1730 human
XP_013413082 1681 KLCTFTITQKeFMNQHWYHCHTCKMvDGVGVCTICAKVCHKDHELTYAKFGSFFCDCGAKEDG-----SCKAMVKR 1751 Lingula anatina
EFX73754     1688 QLCTFVITQKeFMNQHWYHCHTCRMvDGVGVCSVCAKVCHRDHDVTYAKFGSFFCDCGAKDDR-----SCQALVRR 1758 common water flea
PIK61995      513 KLCTFTLTQKvFMNQHWYHCHTCKMvDGVGVCTICAKVCHKGHELSYAKYGSFFCDCGAKEDG-----SCMALIKR 583  Japanese sea cucu...
RDD43185     1607 RLCTYTMTQKeFMNQHWYYCYTCKMvDNTGVCSTCVRVCHKDHEISYAKYSSFFCDCGAKEDG-----SCRALIKR 1677 Trichoplax sp. H2
XP_019858324 1104 KLCTFTETKRdFKNQHWYHCHTCKLtDGTGCCSICVKVCHKGHDVTYSKLGSFFCDCGAKEDG-----SCKALVKR 1174 Amphimedon queens...
CBY19957     1061 KLCTYTHTQReFQSQHWYHCHSCNMiDSVGVCSTCAVVCHEGCNLSYAKHSSFFCDCGAQERApgrhrSCISLQPR 1136 Oikopleura dioica
EEC01405     1165 KLCTFTMTQKeFMNQHWYHCHTCRMvDGVGVCTVCAKVCHKDHDVTYAKFGSFFCDCGAKEDG-----SCQALVKR 1235 black-legged tick
XP_030546007  534 KLCTFTLTQKeFANQHWYHCHTCNMiDQVGVCSVCAKVCHKDHDVTYSKFGAFFCDCAGKENS-----NCIALVKR 604  Rhodamnia argentea
VDP08017      871 KLCTFTITQKeFMNQHWYYCHTCNMtDGEGVCTICAKVCHCGHDLSYAKFGSFFCDCGAKEDN-----SCLALVKR 941  Soboliphyme baturini

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