5TDA,3NY2,5UM3


Conserved Protein Domain Family
UBR-box_UBR2

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cd19679: UBR-box_UBR2 
Click on image for an interactive view with Cn3D
UBR-box found in ubiquitin-protein ligase E3-alpha-2 (UBR2) and similar proteins
UBR2 (EC 2.3.2.27), also called ubiquitin-protein ligase E3-alpha-II (E3alpha-II), or N-recognin-2, is a RING-type E3 ubiquitin ligase of the Arg/N-end rule degradation pathway. It recognizes and binds to proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. UBR2 is associated with chromatin and controls chromatin dynamics and gene expression in both germ cells and somatic cells. It plays an important role in spermatogenesis.
Statistics
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PSSM-Id: 439077
Aligned: 10 rows
Threshold Bit Score: 126.961
Created: 25-Sep-2018
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:5TDA: Homo sapiens UBR2 binds three Zn2+ ions through its UBR-box.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #            #  #        #  #     #  #            # #           #  # 
5TDA_A          6 LCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKeGPYCQKHE 75   human
3NY2_A          6 LCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKeGPYCQKHE 75   human
5UM3_A          6 LCGRVFKVGEPTYSCRDCAVDPTCLLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKeGPYCQKHE 75   human
Q8IWV8         98 LCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKeGPYCQKHE 167  human
XP_007890650   98 LCGRVFKIGEPTYSCRDCAVDPTCVLCMECFLASVHREHRYRMTTSGGGGFCDCGDTEAWKqGPYCQKHE 167  elephant shark
KFU84308       72 LCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKeGPYCQKHE 141  chimney swift
XP_014344709   98 LCGRVFKVGEPTYSCRDCAFDPTCVLCMECFLGSVHREHRYRMTTSGGGGFCDCGDTEAWKkGPYCQKHE 167  coelacanth
KTG32943      110 LCGHVFKVGEPTYSCRECAADPTCVLCMQCFLGSVHKEHRYRMTTSGGGGFCDCGDTEAWKkGPYCQKHE 179  common carp
OCT77622       99 LCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSTHREHRYRMTTSGGGGFCDCGDAEAWKgGPYCQKHA 168  African clawed frog
VDN41129       35 ICGHVFRCGEPTYSCKECACDPTCVLCYQCFLNSTHKAHKYRMTTSGGSGYCDCGDVEAWKqDPACDLHK 104  Gongylonema pulchrum

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