Conserved Protein Domain Family
UBR-box_UBR4_like

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cd19674: UBR-box_UBR4_like 
UBR-box found in RING-type E3 ubiquitin-protein ligase UBR4 and similar proteins
UBR4 (EC 2.3.2.27; also called 600 kDa retinoblastoma protein-associated factor, N-recognin-4, retinoblastoma-associated factor of 600 kDa, RBAF600, p600, or zinc finger UBR1-type protein 1) is a RING-type E3 ubiquitin ligase of the Arg/N-end rule degradation pathway. It recognizes and binds to proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. UBR4 acts as a multifunctional protein with roles in anoikis, viral transformation, and protein degradation, as well as in neurogenesis, neuronal migration, neuronal signaling, and survival. The family also includes Arabidopsis thaliana auxin transport protein BIG (also called protein attenuated shade avoidance 1, protein corymbosa1, protein dark over-expression of cab 1, protein low phosphate-resistant root 1, protein transport inhibitor response 3, or protein umbrella 1). It is a calossin-like protein required for auxin efflux and polar auxin transport (PAT) influencing auxin-mediated developmental responses in Arabidopsis.
Statistics
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PSSM-Id: 439072
Aligned: 25 rows
Threshold Bit Score: 101.267
Created: 25-Sep-2018
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putative Zn
Feature 1:putative Zn binding site [ion binding site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens UBR6 binds several Zn2+ ions through its UBR-box.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                            #  #             #  #   ##  #                        # #     
Q5T4S7       1660 KLCTFTITQkeFMNQHWYHCHTCKMv-----dGVGVCTVCAKVCHKDHEISYAKy-------------gSFFCDCGAKed 1721 human
OHT17199       15 GLCSFNITGrqLRRQHWYHCETCYPly----pNKGCCDACAEICHKGHKLSVGLt-------------pYFFCDCGAGdc 77   Tritrichomona...
XP_011270377 2006 NWCTFPATGsqFKNQYYYVCHDCKPraqngssILAACEVCILTCHKGHRVSEELv-------------gDFFCDCGANal 2072 Capsaspora ow...
OHS97596       13 CQCTFLETGkmISVQHFYQCETCFPns----kIRLVCEICAATCHKGHKIVDAQm-------------aSGFCDCGSGyg 75   Tritrichomona...
ARF12104        5 NQCTFAVTGknYQEQYWRTCYDCFHn-----aSEGVCLNCAALCHDGHHLGPLRs-------------gTFFCDCGDQr- 65   Klosneuvirus ...
OHT13138       21 GKCTFNQTGknYGSQFWWRCETCWPnd----qTRGCCSECAKTCHIGHNLVRMGi-------------gNFFCDCGAGdg 83   Tritrichomona...
QBK88367        5 NDCTFLQTGkhHQNQYWRNCYTCFKd-----lGKGVCLTCAQLCHFGHRLGPIKc-------------sMFYCDCGASg- 65   Mimivirus LCM...
XP_004332927   13 QVCTFSATGttYAQQRWFECRTCGLd-----qGQGCCMSCVKVCHAGHELMPKPpglfywytpglhcaaTSFRDCGPSkk 87   Acanthamoeba ...
AUL78837       17 VTCTYDLTRkkHYYQPWATCYDCFSd-----dEEGACLACLMKCHKGHKLGKIKy-------------wPFFCDCRISg- 77   Tupanvirus de...
TFJ84120      830 GVCTFRATGtsWMRQAYMVCRTCEKysv-lqgNVGCCMPCSQICHKDHDLVQKEe-------------gPFYCDCAIGgf 895  Nannochlorops...
Feature 1              #      
Q5T4S7       1722 ---gsCLALVKR 1730 human
OHT17199       78 pigqyCKCREKP 89   Tritrichomonas foetus
XP_011270377 2073 p--spCCSLLPS 2082 Capsaspora owczarzaki ATCC 30864
OHS97596       76 p--ekCQRMFNF 85   Tritrichomonas foetus
ARF12104       66 ----kCKIGQFS 73   Klosneuvirus KNV1
OHT13138       84 k--qkCKLCKKS 93   Tritrichomonas foetus
QBK88367       66 ----kCKAYSNV 73   Mimivirus LCMiAC01
XP_004332927   88 ---tkCQAMWKP 96   Acanthamoeba castellanii str. Neff
AUL78837       78 ----fCENSIVQ 85   Tupanvirus deep ocean
TFJ84120      896 s-nmkCHCVGLE 906  Nannochloropsis salina CCMP1776

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