3NY1,5TDC,5TDA,3NIH,3NIT,6KGI


Conserved Protein Domain Family
UBR-box_UBR1_like

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cd19672: UBR-box_UBR1_like 
Click on image for an interactive view with Cn3D
UBR-box found in ubiquitin-protein ligases, E3-alpha-1 (UBR1), E3-alpha-2 (UBR2), and similar proteins
This family includes UBR1 and UBR2 (both EC 2.3.2.27). Both UBR1 (also called E3alpha-I or N-recognin-1) and UBR2 (also called E3-alpha-II or N-recognin-2), are RING-type E3 ubiquitin ligases of the Arg/N-end rule degradation pathway. They recognize and bind to proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. Deficiency of UBR1 causes Johanson-Blizzard syndrome. UBR2 is associated with chromatin and controls chromatin dynamics and gene expression in both germ cells and somatic cells. It plays an important role in spermatogenesis.
Statistics
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PSSM-Id: 439070
Aligned: 63 rows
Threshold Bit Score: 79.9879
Created: 25-Sep-2018
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:5TDC: Homo sapiens UBR1 binds three Zn2+ ions through its UBR-box.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1       #            #  #        #  #     #  #             # #           #  # 
3NY1_A       7 LCGRVFksGETTYSCRDCAIDptCVLCMDCFQdSVHKNHRYKMHTSt-gGGFCDCGDTEAWKtgPFCVnHE 76   human
5TDC_A       6 LCGRVFksGETTYSCRDCAIDptCVLCMDCFQdSVHKNHRYKMHTSt-gGGFCDCGDTEAWKtgPFCVnHE 75   human
KII65634    69 MCTKVLtfDDPMYFCLECRAHdsCRICENCFQkSEHVNHEYKDYIAycgDWTCDCGHADAWKcnATCSqHM 139  Thelohanellus kitauei
KII67081    69 MCTKMFdkGDEIFECLDCRGNgkCVLCYECFLnSQHVNHEYKHWISdftYATCGCGDVNAWNghSTCSnHA 139  Thelohanellus kitauei
KII70870    69 VCRKIInsGDEIYQCIECQSNgkCVTCYDCFLhSEHVNHDHKHWISnytNTTCDCGVVESWKchATCSkHM 139  Thelohanellus kitauei
KII62947    69 TCTKIIgeGEPVFMCIDCQRHdlCCLCEYCFLhSEHKNHDYQFMEAsfsGHICGCGVKIFWRhhSACTrHK 139  Thelohanellus kitauei
KII63970    69 TCFKIFdpADEVYSCLDCQNNvnCVMCYDCFLcSEHVNHKHEHWKStkmGLACDCGDTDLWRcnSTCSkHM 139  Thelohanellus kitauei
KII63745    76 MCTKVIpvGDSVYICQDCQFKekSIICYNCFLhSEHVNHEYAVLKStydERICHCGDEYAWKahSSCSkHI 146  Thelohanellus kitauei
KII72153    69 TCTQVIaaGDFVYLCKDCHRHdlCCICEFCFRdSEHTNHRYEVMKAgfsGYICNCGEKDLWRdhSNCTrHK 139  Thelohanellus kitauei
KII65255    71 KCTKIIfkDDLNNRCIDCERHngCCICEDCFLqSEHVNHSYIPLELsfgMNTCDCGELESWEqqSTCSlHQ 141  Thelohanellus kitauei

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