5TDC,5VMD,3NY1


Conserved Protein Domain Family
UBR-box

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cd19669: UBR-box 
Click on image for an interactive view with Cn3D
UBR-box found in UBR family of E3 ubiquitin ligases (UBR1-7) and similar proteins
The UBR-box is a 70-residue zinc finger domain present in the UBR family of E3 ubiquitin ligases (UBR1-7, also called N-recognins) that directly binds N-terminal degradation signals (N-degrons) in substrate proteins to facilitate substrate ubiquitination and proteasomal degradation via the ubiquitin-proteasome system (UPS). UBR1 and UBR2 bind all type-1 and type-2 N-degrons. They mediate ubiquitination and proteolysis of short-lived regulators and misfolded proteins. UBR4 binds both type-1 and type-2 N-degrons and is involved in proteome-wide turnover of cell surface proteins. UBR5 preferentially binds type-1 N-degrons and mediates ubiquitination of short-lived proteins. UBR3, UBR6 (also called FBXO11), and UBR7 may not bind efficiently to N-degrons. UBR3 is a RING-type E3 ubiquitin ligase with a function in olfactory and other sensory systems. UBR6 is an E3 ubiquitin ligase and a type II methyltransferase, which functions as a key regulator of tumor initiation and progression. It does not bind N-terminal signals. UBR7 is a RING-type E3 ubiquitin ligase that may play an important role in spermiogenesis and fertilization.
Statistics
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PSSM-Id: 439067
Aligned: 111 rows
Threshold Bit Score: 39.0359
Created: 21-Jun-2015
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:5TDC: Homo sapiens UBR1 binds three Zn2+ ions through its UBR-box.
  • Structure:5VMD: Homo sapiens UBR6 binds several Zn2+ ions through its UBR-box.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #            #  #             #  #     #    #             # #            #    
5TDC_A          7 CGRVFksgETTYSCRdCaid-----ptCVLCMDCFQdsVH--KNHRYKMHTst-gGGFCDCGdteaw-ktgpfCVnHE 75   human
XP_001011259   22 CMESN---EVMYLCLdCsikd--pkiyVYICQNCLEsqTH--KKHKIIQTDngdlSERCSCGdseml-gvvieCEnHN 91   Tetrahymena the...
XP_001018346   86 CSNYIsnnKVGFYCLdCegnplldsnqMGQCSDCFSkaNH--EGHRYSQINidkiQISCKCGdsnfl-ksqayCKdHK 160  Tetrahymena the...
OHT11387       52 CIANWtkrELIGRCKdCmmn-----ssCCVCIKCLIngPHirENHRVSVQFg--yTGSCDCGlpfaw-spagfCKdHK 121  Tritrichomonas ...
XP_001317131   51 CTYVWeddSLVAICReCsvs-----pmSVICLDCFEhsDH--HNHLTFLVRs--eYGFCDCGkasnm-kvqafCThHH 118  Trichomonas vag...
XP_001301600   63 CDFSVnskNVVGFCLdClkr-----rdSCLCLKCFFngNH--EGHRCGVQMq--lGAFCDCGnsklf-npecfCPeHK 130  Trichomonas vag...
OHT07526       99 CTVSWltpRLCIECHdCetv-----knSVMCIDCFIagNH--LNHNYSIKTl--pFGSCHCGrsflfknnscfCPhHQ 167  Tritrichomonas ...
OHT06651       26 CTEKWktpKLTLFCNtCglf-----naAPLCLSCFMnsKH--QNHDVYFGFp--kTGFCCCGdfnsm-nlnffCPlHS 93   Tritrichomonas ...
XP_001033142   68 CNKIEg--QVLFICLdCtin-----kqYGQCEECFInsNH--LNHRFFMVKss-fETFCACGtnrng-qssytCKrHS 134  Tetrahymena the...
XP_001323606   47 CGISWtskKFALHCEtCqnd-----inSCVCLKCFLngKH--EGHQVSFRYs--sNASCDCGdkqlw-keegfCPdHP 114  Trichomonas vag...

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