6GEB,6GEF


Conserved Protein Domain Family
DotB_TraJ
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cd19516: DotB_TraJ 
dot/icm secretion system protein DotB-like
Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Links
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Statistics
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PSSM-Id: 410924
Aligned: 9 rows
Threshold Bit Score: 266.936
Created: 6-Jun-2012
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
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ATP bindinghexamer
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1                       # ######                           #                          
6GEB_A    153 DNIIEAIApqeGIVFITGATGSGKSTLLASIIRELIets-dsnRKVLTYESPIEFvydei-etisaVVSQSEIPRhlpnF 230 Legionella pneumop...
ADW79838  147 PDLLEAMVcksGLGFVCGETGSGKSTLCSALYRYIMdnf--pdAKIVTYEDPVEYilgne--ndllPPHQAEIGRdvvsF 222 Escherichia coli
EFW77691  145 PDLFEELFpeeGLVIVCGPTGSGKTTLLAGTYGHIGikm--pdRKVITFDDPIEFvlggp-hwkgpQPAQSQIGRdikdF 221 Pseudomonas syring...
EAY56110  138 PALQEALFpldGLVGVAGVTGSGKTTLLAAMLREKLer---ggCHIATAEAPIEFvydkvetrktgIICQSEIPThhpsF 214 Leptospirillum sp....
NP_808703 151 EDLFEALLpsnGLGLIGGITGSGKSTQAAAIYRFCLdtd--pdRKVTTIEDPIEFilarp--gdvlASTQLQIGRdvanY 226 Pseudomonas syring...
ADR62062  165 EEIVRMATprdGIVYVAGATGHGKTTTFAAINRFILendtpikGNLISHEEPIEFtydkv-qskhsIFVQSQIPThfkdF 243 Pseudomonas putida...
ABO11092  185 EEFVLKAIprlGITYVVGETGHGKSTTLASMVRYVYeedthiqGNIITLEEPIEFrydgi-kskhsIIVQSQIPEhfmtF 263 Acinetobacter baum...
NP_820627 138 AAIVDAIApqeGVVYVTGATGSGKSTLLAAIIRELAeap-dshRKILTYEAPIEYvydsl-ttptaSVCQSEIPRhlnsF 215 Coxiella burnetii ...
6GEF_A    167 PELVNQMCpdnGIVMVAGKTSSGKSTTFSSIIRYIMendtpikGHLLTHEDPIEFvydni-ksahsIIAQSQIPEqfssF 245 Yersinia pseudotub...

Feature 1                                                                                     
6GEB_A    231 ADGVRNALRRKPRLIMVGECRDAETISAALEAALTGHPVYTTLHTSgVAETMRRLVTSfsgeerlgRTIDILETIRLCIW 310 Legionella pneumop...
ADW79838  223 AAGLRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKsPGETLARLLGLfppvirdsMAWAVLSLLQFILV 302 Escherichia coli
EFW77691  222 PKAMRNAVRRKPSIIGIGEARDRVSIEAMVEASLSGHTCYATMHTKsVAETINRAIQTyppeqqsgIASRLAGALRVIIV 301 Pseudomonas syring...
EAY56110  215 GKAVEEMLRQKPDAILVGESRDVETIANTVLACQTGHTAYTTVHTNgVGETIGRMAEAfpgperdaVAMKLLAAMRVLIH 294 Leptospirillum sp....
NP_808703 227 AEGIRADLRRAPSIIGVGEMRDLETFQAAVLAGQVGHFNLSTLHIHsPGEAIPRCLTMvpsemreaTAHDLLSVLQYIIV 306 Pseudomonas syring...
ADR62062  244 YRANREAMRRAPGLCVIGELRDQETIRAAVELSLTGHPVFGTVHAKdVAAIMRRMISRfpeqeratAIYDLVDTSRFMMA 323 Pseudomonas putida...
ABO11092  264 GLAVREAMRRKPALLLVAELRDQESFSAAIELSKTGHPVMSTIHSNdVANVLPRIMDLvppdqqhrKLTETISTAHAFIA 343 Acinetobacter baum...
NP_820627 216 AAGVRNALRRKPHAILVGEARDNETISAVLEAALTGHPVYTTLHSSgVAETIRRLVGSfpaeerigRTIDIIETLRLIIW 295 Coxiella burnetii ...
6GEF_A    246 AIANQEALRRTPNLIMIGELRDKQSIESAFEAANTGHPVFATVHSQnCSAVMRRLISRfdesvrgaAIYDLVETTRFIMA 325 Yersinia pseudotub...

Feature 1       #        # #        
6GEB_A    311 QKLVptv-deRRVALREYLVFD 331 Legionella pneumophila
ADW79838  303 QVLVrtn-dgGRKAVREYIVIN 323 Escherichia coli
EFW77691  302 QRLLktt-dgKRTAIREYLVFD 322 Pseudomonas syringae pv. glycinea str. B076
EAY56110  295 QRLLrkadgsGRIAVREWLVFD 316 Leptospirillum sp. Group II UBA
NP_808703 307 QKLLrtt-dgKRQAVREYIIFD 327 Pseudomonas syringae pv. tomato str. DC3000
ADR62062  324 QKLVptv-dgKRTAARSWLRFT 344 Pseudomonas putida BIRD-1
ABO11092  344 QRLVetp-egKLIGVREHLFFS 364 Acinetobacter baumannii ATCC 17978
NP_820627 296 QRLVpsv-dgKRVALREFLVFK 316 Coxiella burnetii RSA 493
6GEF_A    326 QTLVrkt-dgNLVAAREYLNFT 346 Yersinia pseudotuberculosis IP 31758

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