Conserved Protein Domain Family
RecA-like_Ycf2

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cd19505: RecA-like_Ycf2 
ATPase domain of plant YCF2
Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Statistics
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PSSM-Id: 410913
Aligned: 14 rows
Threshold Bit Score: 197.598
Created: 27-Nov-2017
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative ATP
Feature 1:putative ATP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                            # ###                                                     
A2T308    1637 TPASLQLGSfp-sKGILLIGPMETGRSYLIKNLAadsylpsiripvnKLLYNKLdfkntpati----------------- 1698 Angiopteris evecta
NP_848105 1378 IPISLQSGLlp-sKGILLVGPVETGRSSLIRDVAsnsyfpvvklplkKFIYNRSffnnvrgnf----------------- 1439 Adiantum capillu...
P09975    1386 IPVPLQFGLsy-sKGILLIGPIETGRSYLIKNLAaesyvplfkisinKLLYNKPdviteswmn----------------- 1447 liverwort
NP_904208 1538 KPIPLELRLfs-sKGILLIGSQETGRSYLVKNLAansfiplikisinKLLYNKPdilteswin----------------- 1599 Physcomitrella p...
Q85WV5    1354 MPFSFHSGSlf-sKGILLIGPMGTGRSYLIKSLAadsyvplirislkKLLYGKFlyypdpgripte-------------- 1418 Pinus koraiensis
Q8WHW9    1587 TPIPLQLGSsfpsKGILLIGSMETGRSYLIKSLAanyclpliqipinKLLDKKVhfesksvvl----------------- 1649 Psilotum nudum
A6H5M5    1675 KPFSLHLGSsl-sKGILLIGPTETGRSYLVKGLAadsyvplvrislnKFLYDKGeysnfldirs---------------- 1737 Cycas taitungensis
Q06R68    1291 KPFSLRLLSp--sRGVLVIGSIGTGRSYLVKHLAtnshlpfirlavsELLNNNPkfrwiepedswpvfddllehsayyen 1368 Jasminum nudiflorum
B0Z5H1    1421 KTFSLRLPLhp-sRATLVIGSIGSGRSYLVKSLAtnsyvplitvvlnKFLKNWTpqgfdihesgvydeygddaeeandyg 1499 Oenothera parvif...
Q32836    1318 KPFSLRLDLsp-pRGILVIGSIGTGRSYLIKSLAknthfp-litlemEARSSWPffqhldeiygdqleyvyddtslsvev 1395 Pelargonium x ho...
Feature 1                                                                                      
A2T308         --------------------------------------------------------------------------------      Angiopteris evecta
NP_848105      --------------------------------------------------------------------------------      Adiantum capillu...
P09975         --------------------------------------------------------------------------------      liverwort
NP_904208      --------------------------------------------------------------------------------      Physcomitrella p...
Q85WV5         --------------------------------------------------------------------------------      Pinus koraiensis
Q8WHW9         --------------------------------------------------------------------------------      Psilotum nudum
A6H5M5         --------------------------------------------------------------------------------      Cycas taitungensis
Q06R68    1369 rvgdgrdyiidtidasd----------------------------------------dididivargdidfdkeeelltr 1408 Jasminum nudiflorum
B0Z5H1    1500 asffdfldndsddyedrdsdd---------------------------------yepgasddyepgdmedfvdsemtewl 1546 Oenothera parvif...
Q32836    1396 eeeedtswgieewslpdtreddeiedqaemdtrrdldgieythaiqdmidlgisvdaqlnflpesilineieghdvdeld 1475 Pelargonium x ho...
Feature 1                                             #                                        
A2T308    1699 ------------lskqsllrLNLLFESAEKMSPCIIWIQDIHELninrfg--hrseadPKLLLCSvlknisnss-fnsyt 1763 Angiopteris evecta
NP_848105 1440 ------------iskesvhrLNIVFEIAKEMSPCTLWIQDIHELnicrsy--nkleadPKFLLCQilksighkl-gnsdi 1504 Adiantum capillu...
P09975    1448 ------------ilieslrrLNLTLDFAKKMSPCIIWIQNIHQLnvnrlt--qnvesdPTFLLGIllkyfqtdf-sktkk 1512 liverwort
NP_904208 1600 ------------ilmeslrrLNLILELAEKLSPCIIWMPNIHELnvnrst--qnvesdPTFLLGIflkyfqtgf-skknt 1664 Physcomitrella p...
Q85WV5    1419 ---------fntfwrdtidhFHITFELAKRMSPCIIWIPNIHELnvndtithlfglgfTDSFLGLllnyisrgg-ekdsi 1488 Pinus koraiensis
Q8WHW9    1650 ------------fpgesvrrLTLTFELVKRMSPCIVWIQDIHELnldrvm--nelevdPKYLFCSllkclsnns-snyyv 1714 Psilotum nudum
A6H5M5    1738 ----------mnnvvqkmhqFNLTFELAKRMSPCIIWIPNIHELnvn---------ylTHFFLGLlvnhlsrdd-ekdst 1797 Cycas taitungensis
Q06R68    1409 esdeekknpvrvqekyraeqFEEDLELAKIISPCIIWIPNIHDLnlr---------esTSLAAGLfvnkyse----rcst 1475 Jasminum nudiflorum
B0Z5H1    1547 tktnvplvyqllddeidefyITLQFELAKAMSPCILWIPNIHDLdak---------esDYLSLGLlvnhlsrdcgrrstk 1617 Oenothera parvif...
Q32836    1476 eaetelwelwmeewdrhllgISLQFALVRAMTPCILWIPNIHDVdl----------edRTTLAGLmnslsgds--egrst 1543 Pelargonium x ho...
Feature 1                                     
A2T308    1764 knnIVIASTHMPtkVDPAIISpnRLDQLINL 1794 Angiopteris evecta
NP_848105 1505 renVVIATTHVParIDPALVApnRLNQLINF 1535 Adiantum capillus-veneris
P09975    1513 nniIVIGSTHLPkkVDPALISpnRLDKIINV 1543 liverwort
NP_904208 1665 nniIIIGSTHLPkkVDPALISpnRLDRLINI 1695 Physcomitrella patens
Q85WV5    1489 rniLFIASTHIPqrVDPALIApnRLDSSINI 1519 Pinus koraiensis
Q8WHW9    1715 rnnIIIAPTHIPskVDPSFISpnRLDQLINI 1745 Psilotum nudum
A6H5M5    1798 rnlLVIASTHIPkkVDPAPIApnRLDRSINV 1828 Cycas taitungensis
Q06R68    1476 rdiLVIASTHIPqkVDPSLIStnRLNRCIKV 1506 Jasminum nudiflorum
B0Z5H1    1618 neiLVIASTHIPqkVDPSLIGpdGLSTCIKT 1648 Oenothera parviflora
Q32836    1544 rktLVIASTHLPkkVDPALIAsnRFNTCIKV 1574 Pelargonium x hortorum

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