3EZH,6YUE


Conserved Protein Domain Family
NarX_NarQ_sensor

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cd19408: NarX_NarQ_sensor 
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ligand binding sensor domain of NarX and NarQ, and related chemoreceptors
The periplasmic ligand binding sensor domain of NarX and NarQ is a histidine kinase receptor that responds to nitrate and nitrite to effect regulation of anaerobic respiration in various bacteria and similar proteins. It forms a homodimer and binds to ligands such as nitrate via the dimerization interface, a feature that appears to be conserved in this domain superfamily. NarX-NarL sensor-response regulator pair, along with NarQ-NarP, control Escherichia coli gene expression in response to nitrate and nitrite. NarX has been shown to exhibit a clear kinetic preference for NarL over NarP, whereas NarQ exhibits a relatively slight kinetic preference for NarL. There is asymmetry in the Nar cross-regulation network with NarQ shown to interact similarly with both response regulators, while NarX interacts preferentially with NarL.
Statistics
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PSSM-Id: 438626
Aligned: 104 rows
Threshold Bit Score: 93.4616
Created: 17-Jul-2018
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand bindinghomodimer
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:3EZH: Escherichia coli histidine kinase NarX sensor domain binds a nitrate ion, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                     ## ##                                                              
3EZH_A         1 QGVQGSAHAINKAGSLRXQSYRLLAAVPl-----------sEKDKPLIKEXEQTAFSAELTRAAErd---gQLAQLQGLQ 66  Escherichia col...
WP_046553012  33 DKTDSDAHAVNVAGSLRMQSYRMAWLHQqn---------vpEKLQQAREQFTASWQHPVFQRFMHnk---kILTQFEAAR 100 Arsukibacterium...
WP_091340292  33 DKADSDAHAVNVAGSLRMQSYRLAWLKLqq---------epERLAGAKQQLNSSWQHPVFKRFLHqp---eIQTKYDTAF 100 Alkalimonas amy...
WP_149611231  39 VNTQNDAEAINLAGSLRMQSYRISNHLAlaalgr--eketlQQLTAEMDEFAQKLGTSIIPLVVHdannvpLSKSYQQVR 116 Halioglobus sp....
WP_094789349  36 ESTDQDAAAVNIAGSLRMQSYRLLNLVMrnaie----rqtsQSVYPLLEEFSRSLTAPALLQEVRget-taLSKQYQVVK 110 Zooshikella gan...
RLA47099      39 VDTQGDAEAINLAGSLRMQSYRIGNLLSrassgd--vadplARLVREKEAFSDKLYRSGIVVSIQqsgntpLQDSYARVV 116 Gammaproteobact...
WP_062478205  36 DSAEQDAYAVNVSGSIRMQSYRLLNTIQqn---------daQTARRELAELERRLSSNTLTSGTQdht-seLSLAYQSVQ 105 Lacimicrobium a...
PCJ91641      43 LNTQHDAEAINIAGSMRMQSYRIAVLLKqqtssisaretmaEALTKEHRLFSQKLYKSSISKTAEkfnhgaIKHRYTDVV 122 Porticoccaceae ...
OOF33862      18 DNAQTDAHAINLSGSMRMQSYLILNKKItnn--------ksEEIDRLISDFEKKLSNPVLMQATKkt---eKKKLHDAIW 86  Salinivibrio co...
WP_087534071  36 QLSEFDGAAINLSGSMRMKSYQLTTEVAlyqqtk--qqshhQTVLTLIDEFEHSINNPLLQKDFSleqlteQKYDYNQIK 113 Pseudoalteromon...
Feature 1                                                                    
3EZH_A        67 DYWRNELIPALXra------------qnRETVSADVSQFVAGLDQLVSGFDRTTEXRIET 114 Escherichia coli K-12
WP_046553012 101 QHWQQIETVFLQpa-------------nAEQLEQVLQQQIALVEQLVFYIQQDAEQKVRS 147 Arsukibacterium sp. MJ3
WP_091340292 101 QHWQAVAPLLAAeq------------tdIAELELALIEQVRLLDELVLAIQLDAEQKVRA 148 Alkalimonas amylolytica
WP_149611231 117 DNWQLSMSPLLQatlqgg----lswqdsYTRYNSELDRWVADIDTMVTHLQRENEGKIEL 172 Halioglobus sp. NY5
WP_094789349 111 QQWFSDIKKQIEketys------wnslqLNFLQHKIESFVVEIDKLVHLYQRLAEKKIDT 164 Zooshikella ganghwensis
RLA47099     117 DNWQDKMQPMLAvastdap--asrwddiRRQYNAHLEAYVDDIDQMVLHMQRNTEGKIEL 174 Gammaproteobacteria bacterium
WP_062478205 106 HHWNHELKPLFEvais--------kpipNTEIRQAVDRFVQKLEVLVSQYQRHAERNIAR 157 Lacimicrobium alkaliphilum
PCJ91641     123 NSWENIIVPVFLpimsphnlsseqinlaSEHYLTLVDEHVNKIDTLVLSIQQNTEEKIEL 182 Porticoccaceae bacterium
OOF33862      87 YDWNNEIKPLILdshl--------tnqkLNKLEKKLNDLVANIDHLVKTYQVHAEDNNRL 138 Salinivibrio costicola subsp. alcal...
WP_087534071 114 VQWQTTVKPLILkalt---------qesVSPVIAPLTEFVTSLDNLVRGYQGIFEKRMAT 164 Pseudoalteromonas sp. A601

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