1SK7,1J77


Conserved Protein Domain Family
HemeO-bac

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cd19166: HemeO-bac 
heme oxygenase found in pathogenic bacteria
This subfamily contains bacterial heme oxygenase (HO, EC 1.14.14.18), where HO is part of a pathway for iron acquisition from host heme and heme products. Most of these proteins have yet to be characterized. HO catalyzes the rate limiting step in the degradation of heme to biliverdin in a multi-step reaction. HO is essential for recycling of iron from heme which is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes heme oxygenase (pa-HO) from Pseudomonas aeruginosa, an opportunistic pathogen that causes a variety of systemic infections, particularly in those afflicted with cystic fibrosis, as well as cancer and AIDS patients who are immunosuppressed. Pa-HO, expressed by the PigA gene, is critical for the acquisition of host iron since there is essentially no free iron in mammals, and is unusual since it hydroxylates heme predominantly at the delta-meso heme carbon, while all other well-studied HOs hydroxylate the alpha-meso carbon. Also included in this family is Neisseria meningitidis HO which is substantially different from the human HO, with the reaction product being ferric biliverdin IXalpha rather than reduced iron and free biliverdin IXalpha. HO shares tertiary structure similarity to methane monooxygenase (EC 1.14.13.25), ribonucleotide reductase (EC 1.17.4.1) and thiaminase II (EC 3.5.99.2), but shares little sequence homology.
Statistics
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PSSM-Id: 350857
Aligned: 641 rows
Threshold Bit Score: 74.9777
Created: 15-Jun-2018
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:heme binding site [chemical binding site]
Evidence:
  • Structure:1J77: Neisseria meningitidis heme oxygenase in complex with heme; contacts at 4.0A
  • Structure:1SK7: Pseudomonas aeruginosa heme oxygenase (pa-HO) in complex with heme; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #      #  ##                                                               
1SK7_A     14 RSQRLNLLTNEPHQRLESLVKSkepfasrdNFARFVAAQYLFQHDLEPLYRneala---rlfpgLASRa---RDDAARAD 87  Pseudomonas aerugi...
1J77_A     11 FAKRLKADTTAVHDSVDNLVMSvqpfvskeNYIKFLKLQSVFHKAVDHIYKdaeln---kaipeLEYMa---RYDAVTQD 84  Neisseria meningit...
KJJ97233   14 ALAALRAATQELHADLDSRSPLtsal-tqaDYLDHAARVLGWMRPLEQALWplwp-----daedAALRq--gKSQWLEDD 85  Pseudomonas sp. 21
KRB93766    7 ALEALRQATGDVHQQLEQSLTInrpgagkrEYLAYLEDLRGWMASFEAALWnapw------paeMEAReradKLAWIDTD 80  Noviherbaspirillum...
KSJ02082    8 ALAALRDATRDLHAELDRRSPLgddylddrAYLDHAGRILGWLDPLERALRdnrsgw--paalrAEARl--vKSAWLESD 83  Pseudomonas aerugi...
CUA83279    7 ALARLRAGTQASHAALEAALPFaqagfsapHYLRHVARVHCWLRPLEAVLWqadwp---aalmlAPRRd---KVRWIEAD 80  Gulbenkiania indica
SDR94967   10 ALAALRDATRTLHSDLDQLSPLnqdtlqtgSYLHHAARVLGWMHPLEHALWhapmaaslpaqfaVEKRr--dKSAWLERD 87  Pseudomonas xinjia...
SDX45213   14 ALTALRLATQAEHSALDQNLPLqrddfahaDYLNYISRVSGWLKPLEATLWaspwp---aladaGQRAg---KLAWIEAD 87  Pseudomonas kuyken...
PCC97461   21 ALTALREATRDLHSELDTLSPLlrsplpesVYNDHAARVLGWMAPLEQALWegpaaslwpneiqVAKRs--gKVQWIEQD 98  Pseudomonas pelagia
SNZ12847   56 ALLALRDATRELHAELDGHSPLtapgldtqTYAQHAGRVLGWMRPIEAQLYgdtakw-qqvlqaQERAc---KAAWISND 131 Pseudomonas sp. UR...
Feature 1                                      ##  ## ##  ##                            #     
1SK7_A     88 LADLghpvpegdq----svreadlslAEALGWLFVSEGSKLGAAFLFKKAAALeldenfGARHLAEpeggrAQGWKSFVA 163 Pseudomonas aerugi...
1J77_A     85 LKDLgeepykfd------kelpyeagNKAIGWLYCAEGSNLGAAFLFKHAQKLdyngehGARHLAPhpdgrGKHWRAFVE 158 Neisseria meningit...
KJJ97233   86 LLAGahaedpvvdc---pcvpkpvclAEAFGIAYVAEGATLGGRVLYKRLKTSld--plPLRWLHGygeqtGERWGSFQR 160 Pseudomonas sp. 21
KRB93766   81 LRAGgrsshaiqaipvagftpdlaalPARFGVAYVIEGAQLGTKVLSRALAPGlh--pwSPRWLEGygdqnAKRWRVFTD 158 Noviherbaspirillum...
KSJ02082   84 LQAGgmsraqvealprcadlpnatraAEVFGVAYVMEGATLGGAYLYKRLAPRlp--glPLQWLRGygqatGVHWQEFLE 161 Pseudomonas aerugi...
CUA83279   81 LMAGgwtaadlatlkavdwlpgspgpAARFGLAYVAEGATLGARHLYRRHAAAlt--plPLRWWQAygeatAPLWKNFLT 158 Gulbenkiania indica
SDR94967   88 LLDGgyssldvaniphcpyiaspsnqAELLGMAYVAEGATLGGTFLRKRWAGRfd--glSLRWLQGygaetGTMWKTFLH 165 Pseudomonas xinjia...
SDX45213   88 LLEGgwsraqvdaipvcpyvpqasddARRFGIAYVLEGSTLGSSFLFRRLQPRla--plPLHWLLGygaatGPLWKSFIR 165 Pseudomonas kuyken...
PCC97461   99 LLNAgynaaklaelehcpyvpvprtlAQSFGVAYVSEGATLGGAFLFNRLASFlp--glPLNWLKGygvetGPLWTSFQR 176 Pseudomonas pelagia
SNZ12847  132 LQEAghdprsfddc---pftpqpnslPEAFGVSYVCEGATLGGAFLYKRLRQQls--plSLQWLQGygaqtGPLWQRWQA 206 Pseudomonas sp. UR...
Feature 1                           #  #      
1SK7_A    164 ILDGielneEEERLAAKGASDAFNRFGDLLER 195 Pseudomonas aeruginosa
1J77_A    159 HLNAlnltpEAEAEAIQGAREAFAFYKVVLRE 190 Neisseria meningitidis
KJJ97233  161 LLAEhvttaEDISRAQAAAVCAFTSFRDWVID 192 Pseudomonas sp. 21
KRB93766  159 CVEHylttdEAHRVAASAAREAFTSLADWFAA 190 Noviherbaspirillum sp. Root189
KSJ02082  162 QLDRqidspEAIGLAQDAAQATFLSFRRWVLD 193 Pseudomonas aeruginosa
CUA83279  159 VLEDalpseADRAEATRWAAAAFDAFRLHVAA 190 Gulbenkiania indica
SDR94967  166 VLAVqvttpAEIADAQRAAQTTFLSFRRWVID 197 Pseudomonas xinjiangensis
SDX45213  166 RLEEqlseaAQIEAASAAAREAFESFSRWVVR 197 Pseudomonas kuykendallii
PCC97461  177 QLAQhvvsqESILEAQESARQAFHSFRCWVID 208 Pseudomonas pelagia
SNZ12847  207 ALAEhvvepADIEAAAAAARAAFESFRGWVIQ 238 Pseudomonas sp. URIL14HWK12:I9

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