2BG9,5HBT


Conserved Protein Domain Family
LGIC_ECD_nAChR_A1

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cd19014: LGIC_ECD_nAChR_A1 
extracellular domain of nicotinic acetylcholine receptor subunit alpha 1 (CHRNA1)
This subfamily contains the extracellular domain of nicotinic acetylcholine receptor subunit alpha 1 (alpha1), encoded by the CHRNA1 gene. These muscle type nicotinic subunits form heteropentamers with other nAChR subunits, most broadly expressed as combination of two alpha1, beta1, delta, and epsilon subunits in mature muscles, and of two alpha1, beta1, delta, and gamma in embryonic cells. The alpha1 subunit in human nAChR is the primary target of Myasthenia gravis antibodies that disrupt communication between the nervous system and the muscle, causing chronic muscle weakness.
Statistics
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PSSM-Id: 349815
Aligned: 6 rows
Threshold Bit Score: 427.352
Created: 2-Oct-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
pentamerCys-loop
Conserved site includes 25 residues -Click on image for an interactive view with Cn3D
Feature 1:pentamer interface [polypeptide binding site]
Evidence:
  • Comment:this heteropentamer is formed with two alpha subunits, and one each of beta, gamma and delta subunits
  • Structure:2BG9: Torpedo marmorata extracellular domain of nicotinic acetylcholine receptor subunit alpha 1 interacts with neighboring subunits and forms a heteropentamer; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                          # #     ##      #                     # #  
2BG9_A      2 EHETRLVANLLENYnkVIRPVehhthFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPaDYGGIKKIRLP 81  marbled electric ray
5HBT_B      3 EHETRLEAKLFKDYssVVRPVedhrqVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPdDYGGVKKIHIP 82  human
P22456     22 EDESRLINDLFKSYnkVVRPVkafkdKVVVTVGLQLIQLINVNEVNQIVTTNVRLKQQWEDVHLKWDPeDYGGIKKVRIP 101 African clawed frog
P09479     21 EHETRLVDDLFREYskVVRPVenhrdAVVVTVGLQLIQLINVDEVNQIVTTNVRLKQQWTDINLKWNPdDYGGVKQIRIP 100 chicken
Q98880     22 EDETRLVKTLFTGYnkVVRPVshfkdPVVVTVGLQLIQLISVDEVNQIVTSNVRLKQQWKDVHLQWNPdDYGGIRKIRIP 101 zebrafish
P05377     22 DHETRLIGDLFANYnkVVRPVetykdQVVVTVGLQLIQLINVDEVNQIVSTNIRLKQQWRDVNLKWDPaKYGGVKKIRIP 101 African clawed frog
Feature 1           ## # ##   # ##   ### #         # # #   #                     #            
2BG9_A     82 SDDVWLPDLVLYNNADGDFAIVhMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDgtKVSISPE 161 marbled electric ray
5HBT_B     83 SEKIWRPDLVLYNNADGDFAIVkFTKVLLQYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDgsAVAINPE 162 human
P22456    102 SSDIWRPDIVLYNNADGDFAIVqETKVLLDYTGKIIWLPPAIFKSYCEMIVTYFPFDLQNCSMKLGTWTYDgtLVVINPE 181 African clawed frog
P09479    101 SDDIWRPDLVLYNNADGDFAIVkYTKVLLEHTGKITWTPPAIFKSYCEIIVTYFPFDQQNCSMKLGTWTYDgtMVVINPE 180 chicken
Q98880    102 STDLWKPDLVLYNNADGDFAIVhETKVLLEHTGMITWTPPAIFKSYCEIVVLHFPFDLQNCSMKLGTWTYDgnLVIINPD 181 zebrafish
P05377    102 SSDVWSPDLVLYNNADGDFAISkDTKILLEYTGKITWTPPAIFKSYCEIIVTYFPFDQQNCSMKFGTWTYDgsLLVINPE 181 African clawed frog
Feature 1                                                     # 
2BG9_A    162 SDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIP 211 marbled electric ray
5HBT_B    163 SDQPDLSNFMESGEWVIKESRGWKHSVTYSCCPDTPYLDITYHFVMQRLP 212 human
P22456    182 NDRPDLSNFMESGEWYMKDYRCWKHWVYYDCCPETPYLDITYHFLLQRLP 231 African clawed frog
P09479    181 SDRPDLSNFMESGEWVMKDYRGWKHWVYYACCPDTPYLDITYHFLMQRLP 230 chicken
Q98880    182 SDRPDLSNFMESGEWVMKDYRSWKHWVYYACCPDTPYLDITYHFLLLRLP 231 zebrafish
P05377    182 RDRPDLSNFMASGEWMMKDYRCWKHWVYYTCCPDKPYLDITYHFVLQRLP 231 African clawed frog

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