5IVW,2VSF,3CRV


Conserved Protein Domain Family
SF2_C_XPD

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cd18788: SF2_C_XPD 
Click on image for an interactive view with Cn3D
C-terminal helicase domain of xeroderma pigmentosum group D (XPD) family DEAD-like helicases
The xeroderma pigmentosum group D (XPD)-like family members are DEAD-box helicases belonging to superfamily (SF)2. This family includes DDX11 (also called ChlR1), a protein involved in maintaining chromosome transmission fidelity and genome stability, the TFIIH basal transcription factor complex XPD subunit, and FANCJ (also known as BRIP1), a DNA helicase required for the maintenance of chromosomal stability. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Statistics
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PSSM-Id: 350175
Aligned: 30 rows
Threshold Bit Score: 156.61
Created: 7-Feb-2018
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative ATP
Conserved site includes 2 residues -Click on image for an interactive view with Cn3D
Feature 1:putative ATP binding site [chemical binding site]
Evidence:
  • Comment:based on homology to other members of the superfamily

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
5IVW_W        488 VCLCPMIIGrgndqvaiss----kfetrediavIRNYGNLLLEMSavvPDGIVAFFTSYQYMESTVAswyeqgileniqr 563  human
2VSF_A        394 NRYIAYYDGvsskyd------------tldekeLDRMATVIEDIIlkvKKNTIVYFPSYSLMDRVENrvsfehmkeyrgi 461  Thermoplasma ...
OCT47254      463 RSFLPMIVTrgsdqqsits----gfqsrsdpgvVRNYGALLFEFAkitPDGIVVFFPSYLYMEMIISmwqgmgildqiwt 538  Cladophialoph...
KIH57306      345 PCLSPLVVArgndqvamts----rfeqrsdvavIRNYGNLVLEMAavvPDGMVVFFTSYVYMESVIAvwyeqhvidelmk 420  Ancylostoma d...
XP_020430612  390 SCICPCILTrgsdqisvst----kfdvradtavIRNYGALLVEMSaivPDGIICFFTSYSYMEQIVSvwnemgllnniln 465  Polysphondyli...
OXB80435      741 ENILPIVLCtgpsnqqlef----tyqtrdlpqlMDETGRILCNLCnvvPGGVVCFFPSYDYEKQVYAhwektglltrlat 816  northern bobw...
OCT88134      641 ENILPIVLCsgptnqqleftyqkrdlpemgsiyMDETGRILTNLCnvvPGGLVCFFPSYDYQKHIQEhweksgllkrlal 720  African clawe...
F1R345        639 ENILPIVLCagpsgqqlef----tfqtrdspqmMEETGRVLSNLCnivPGGVVCFFPSYEYEKRILGhwestgilqrlqs 714  zebrafish
XP_002113256  447 PSLCPLIVTrgndqvtiss----kfesrediavMRNYGNLLAELTasvPDGVVCFFPSYTYMESVVSfwcdqgimnniir 522  Trichoplax ad...
XP_002402458  490 PSICPMIVSkgndqvamts----kfetrddiavVRNYGTLLVEVAssvPDGVVCFFTSYMYLEGVVAswyeqgvidqiqr 565  black-legged ...
Feature 1                                                                                         
5IVW_W        564 nkllfiet----------qdgaetsvalekyqeacengRGAILLSVARGKVsegidfvhHYGRAVIMFGVPYVytqsril 633  human
2VSF_A        462 d------------------------qkelysmlkkfrrDHGTIFAVSGGRLseginfpgNELEMIILAGLPFPrpdainr 517  Thermoplasma ...
OCT47254      539 yklilvet----------pdaqetslaletyrtacengKGAILLCVARGKVsegidfdhHYGRTVLCLGAPFQytesril 608  Cladophialoph...
KIH57306      421 skllfietndaletsvalekidhlgqcmfryvdacdsgRGACLFSVARGKVsegidfshHLGRCVIMLGIPYVytesril 500  Ancylostoma d...
XP_020430612  466 nklifvet----------sdaaesalalqnykkacdsgRGAVLLSVARGKVsegidfdnQYGRCVILYGIPYIntesrvl 535  Polysphondyli...
OXB80435      817 kkkifqepkka---nqveqvlaeyakcikrcsqaggqmTGALLLSVVGGKMseginfsdDLGRCVVMVGMPYPnikspel 893  northern bobw...
OCT88134      721 kkkifqepkra---nqldqvlaeyskcikncrqfggalNGALLFSVVGGKMseginfsdDLGRCVVMVGMPYPnirspel 797  African clawe...
F1R345        715 kkkifqepkka---sqveqvlseyskciqrcsnigggqTGALLFSVVGGKMseginfsdDLGRCIVMVGMPYPnikspel 791  zebrafish
XP_002113256  523 nkllfiet----------qdlaetvlalenyykacengRGAVLLSVARGKVsegidfdhHYGRAVLMFGIPYVytqsrkl 592  Trichoplax ad...
XP_002402458  566 rkllfiet----------qdaaetslalvnyikacengRGAVLLSVARGKVse----gvDFGKAVLMFGIPFVytqsril 631  black-legged ...
Feature 1                                              #  #               
5IVW_W        634 kar-----leylrdqfqiRENDFLTFdaMRHAAQCVGRAIRgktDYGLMVFADKRF 684  human
2VSF_A        518 slf------dyyerkygkGWEYSVVYptAIKIRQEIGRLIRsaeDTGACVILDKRA 567  Thermoplasma acidophilum DSM 1728
OCT47254      609 kar-----leflrenyriKEQDFLSFdaMRHAAQCLGRVLRgkdDYGIMVLADRRF 659  Cladophialophora carrionii
KIH57306      501 rar-----leylrdqfgiKENDFLTFdaMRHTAQCMGRALRgktDYGLMIFADKRF 551  Ancylostoma duodenale
XP_020430612  536 rar-----leyqrdkyqiKENEFLTFdaMRTASQCVGRVIRgksDYGIMIFADKRY 586  Polysphondylium pallidum PN500
OXB80435      894 qekmtwldktmpraagqaPSRVLIENlcMKAVNQSIGRAIRhqkDFASILLLDHRY 949  northern bobwhite
OCT88134      798 qekmsyldktlpktegvsAGRVLIENlcMKAVNQSIGKAIRhrrDYASIVLLDHRY 853  African clawed frog
F1R345        792 qekmayldkhmphvagksPGKALVESlcMKAVNQSIGRAIRhrgDYACIVLCDHRY 847  zebrafish
XP_002113256  593 rarl---dylrenyqireNDFLTFDAmrHAAQASCVGRAIRgksDYGIMVFADKRY 645  Trichoplax adhaerens
XP_002402458  632 rar-----leylrdqyqiRENDFLTFdaMRHAAQCVGRALRgktDYGIMIFADKRF 682  black-legged tick

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