Conserved Protein Domain Family
ABC_6TM_AarD_CydD

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cd18584: ABC_6TM_AarD_CydD 
Six-transmembrane helical domain (6TM) of the CydD, a component of the ABC cysteine/GSH transporter, and a homolog AarD
The CydD protein, together with the CydC protein, constitutes a bacterial heterodimeric ATP-binding cassette (ABC) transporter complex required for formation of the functional cytochrome bd oxidase in both gram-positive and gram-negative aerobic bacteria. In Escherichia coli, the biogenesis of both cytochrome bd-type quinol oxidases and periplasmic cytochromes requires the ABC-type cysteine/GSH transporter CydDC, which exports cysteine and glutathione from the cytoplasm to the periplasm to maintain redox homeostasis. Mutations in AarD, a homolog from Providencia stuartii, also show phenotypic characteristic consistent with a defect in the cytochrome d oxidase. The CydDC forms a heterodimeric ABC transporter with two transmembrane domains (TMDs), each predicted to comprise six TM alpha-helices and two nucleotide binding domains (NBDs).
Statistics
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PSSM-Id: 350028
Aligned: 370 rows
Threshold Bit Score: 183.765
Created: 11-Dec-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:TM helix 1 [structural motif]
Evidence:
  • Comment:All members of this ABC transporter family contain 6 alpha-helices in each transmembrane domain (TMD) for a total of 12 TM segments in the complete transporter.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1      ########################                                                       
P29018     27 SRLLGFVSGILIIAQAWFMARILQHmime----------nipREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRF 96  Escherichia coli K12
ODU34203    8 AAAAGTAATLAYAVFAAALAAIVASwt-------------gtGTVGRGAWIALVLALVARSALNALREAGGAQASLILRR 74  Xanthomonadaceae b...
EEV22757   25 AWGLSVVSTLVLIVQSWLIAVIFADwltqit------hhrpaTDVFFDYLPWLLGCLLLRPLLHFCKDQLALDAGLQVAS 98  Enhydrobacter aero...
OBP16808   28 SALLAALSVPLLIAQLWWLADIAASll-------------qhQPPPLASWLGFAALFVLRQLLLSGKELLAQQVSRELRR 94  Rheinheimera sp. SA_1
AKX52049   16 ALLLATLNVALFILQSAILAHLIGTaltnwna----peatglGINLFNYLPWLLLCLVLRPLLHYGREHLSQTASYRARL 91  Pseudomonadaceae b...
OBX76031   28 AWALSALATLALIGQCYALASVFANllmavhhglaqnsgqilLADNAVWLGMLAICMLLRVLLHTVRQWLAQNAGWQVAA 107 Moraxella atlantae
ABR70436   38 AQGFGVLFAVSLVLQAWAFANVFSDma-------------lhQSFSLSLLVMGLFALLIRALASFGRERICTSASRDIRY 104 Marinomonas sp. MWYL1
KLT73472   23 ALLPALLSVGLLVVQSALLADLFAAwldsta-----ngetlqIARLYELLPWIIGCLLLRPFLSLVKERILQNLSLEIRH 97  Neisseria sp. KH1503
EAR08776   15 LVALQLSRSLLLWWWFYRLSSWLGAvl-------------qdGLDQPFPALTTVVVGAVLFGLRWLEARLRAHLGQRVQQ 81  Reinekea blandensi...
ADG61336   41 AWLCDVISLLLFMVQAWILVMIFDGwllpfipe-lsqhqvmaIEALAVYVMALFGVMLLRALIGYAKDALLTRIGVQAAS 119 Moraxella catarrha...
Feature 1                                                                                     
P29018     97 AIRRQVLDRLQQAgpawiqGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAiFPSNWAAALILLGTAPLI 176 Escherichia coli K12
ODU34203   75 QVRKDLLAALERLgplrhrAGDDGALATVAVEQVDALDGYVARYLPQRHVAAFVPLLLWLLvLPRSWLAALLLLATAPLI 154 Xanthomonadaceae b...
EEV22757   99 ILRKTLVEKLAQVgaardqYGSDGGLASMVIEQCDALTGYVSRFYLQRLIVVTTPIMLLVAaATQSWIATLILLLTAPLV 178 Enhydrobacter aero...
OBP16808   95 QLRQQLLQKLELLgparqrFGADGSLSTLITEQVDALDGYISRYWPQLVQVVVAPLLIAIAvGWHSLFAAALLLCTAPLV 174 Rheinheimera sp. SA_1
AKX52049   92 QVRKQLLNTLAGLgperqqLGADGALSAKLLEQVDALDGYISRYYVQLYLVLLTPILLLVAtAYYSWLAAALLLLTAPLV 171 Pseudomonadaceae b...
OBX76031  108 NLRQRIMQRLAQLgnertrFGSDGSLASQVINQTDALADYVSRFYIQRYVVASTPLLLLLAaATQSLVATGVMLLTAPLV 187 Moraxella atlantae
ABR70436  105 SLRSKLVSHLTNLgparlrIEEDAALSTRVYEQVDALDDFFSRYKPQVFMVTLIPCVILLSvVSISWIAFFVFMMTAPLV 184 Marinomonas sp. MWYL1
KLT73472   98 NLRQRLLAVLAKLgpersrFGSDGALSMQVLEQTDALDGYISRFYVQRTIAVATPLVIAAAvLAHSKLAAVLMLVTAPLV 177 Neisseria sp. KH1503
EAR08776   82 AFYQRFFSELSHRrwalirYKPVTAWQDVCFRHLPAMESYLLDYKTQQRLIAIVPLLVLGIvFPISWLAGLILLVTLPLL 161 Reinekea blandensi...
ADG61336  120 DVRQRLLVKLGDMgpa-rrFFGSDGALASKIIDEPEHLIGYARFEIQKKTAVSTPILLAVCiSFLNKTAAMILLATAPLV 198 Moraxella catarrha...
Feature 1                                                                                     
P29018    177 PLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEdFRQRTMEVLRLAFLSSGILEFF 256 Escherichia coli K12
ODU34203  155 PLFMLLVGRGAARASEAQAGALGRLGAQFLDLLRGLPTLRLLGATARGAARLAASAEdYRQRMLAVLRLAFLSAAVLELF 234 Xanthomonadaceae b...
EEV22757  179 PVFMVLIGHATARKSRQQFAAMAQLSGRFLDWLRGTATLQRLDAVGHASQDIDASAEaYRMRTMSVLKIAFLNTAALELL 258 Enhydrobacter aero...
OBP16808  175 PLFMVLVGREASKASQQQLQVLSRMGGRLYIFLQGLPLLKRLNATGVAAEHLQGAAErYQKSTMQVLRLAFLSTAVLELF 254 Rheinheimera sp. SA_1
AKX52049  172 PLFMILVGGAAAKSSQQQLAAMSHLSSRFLDLARGMPTLQHLAATTQAQRSIATAAEqYRIKTMGVLKLAFLSGAVLELF 251 Pseudomonadaceae b...
OBX76031  188 PIFMILIGSATAKKSAEQFAALAQLGGRFLDWLRGMPTLQRLSATQQARTDIAAAAEaYRNRTMAVLKIAFLNSAALELL 267 Moraxella atlantae
ABR70436  185 IIFMIFVGHKAAQANRRQFNVLAMLSNQFMDLSQGLAELKRLNRTAEARERLSDSATsYQKTTMGVLVLAFLSTATLELF 264 Marinomonas sp. MWYL1
KLT73472  178 PLFMVLVGSAAADKSRRQLDTLAQLGGRFLDLARGMATLKRLGAVPQAQAQVSASAKaYQERTMGVLALAFLSGAVLELF 257 Neisseria sp. KH1503
EAR08776  162 PLFMWLVGAGTASVQRKHMQVLNRLGGFFADRVAGVSTVRLLNQEADQLQRFDRRSRqHNERLADVLKVAFLSSSVLDFF 241 Reinekea blandensi...
ADG61336  199 PIFMAMIGVATARKSREQMDAMAQLGGRFFDWIRGVNTLSRLGVVDIAVKDIDVSSDnYRKKTMAVLRIAFLNSAVLEFL 278 Moraxella catarrha...
Feature 1                                                                         
P29018    257 TSLSIALVAVYFGfsylgeldfghydtgVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSL 324 Escherichia coli K12
ODU34203  235 ASIGIALVALYLGlallgrfdighygvpLRLDTALFVLLLAPECYAPLRQLGVDYHARADALAAAAAI 302 Xanthomonadaceae bacterium SCN...
EEV22757  259 AALSIALLAVYLGfgligilpwqkntvpVPYQSALFLLLLAPEFYAPLRQLGADYHVKAQAEGAIAEL 326 Enhydrobacter aerosaccus SK60
OBP16808  255 TSLAIALVALYLGlgllgelpwlkqqvpVLYQPALFILLLAPEFYQPLRQLGNDYHAKAQAQAATLNL 322 Rheinheimera sp. SA_1
AKX52049  252 SALAVALVAVYLGmgllgmlpwakgeipVAYTGALFILLLAPEFYAPLRQLGSDYHAKAEAEAAVGEL 319 Pseudomonadaceae bacterium B4199
OBX76031  268 SALAIALLAVYLGlgllgllpwqkgvvpVDYHAALFLLLLAPEFYAPLRQLGADYHIKAQAEGALDSL 335 Moraxella atlantae
ABR70436  265 ASLSIAMIALYLGlgllevlpwqvgsspVTLTQAMFLLLLAPEFYLPLRQLGNDYHAKQKAEAAATDL 332 Marinomonas sp. MWYL1
KLT73472  258 ASLAIALVALYLGlgligvlpwaqgevpVPYQSALFILLLAPEFYAPLRQLGNDYHAKAQASVAAEAL 325 Neisseria sp. KH1503
EAR08776  242 ATVSMALIAVLVGfsllgevpfgfydtgATLSSGLFVLLLAPAFFAELKTLGRLYHVKAEATASADLW 309 Reinekea blandensis MED297
ADG61336  279 SALSIALVAVYLGfgligilpwqsgvviTTYSSALMILLLVPEFYAPLRRLGAEYHVKGQAVGAAKEM 346 Moraxella catarrhalis BBH18

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