Conserved Protein Domain Family
BTB_POZ_KCNS1

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cd18426: BTB_POZ_KCNS1 
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily S member 1 (KCNS1)
KCNS1, also called delayed-rectifier K(+) channel alpha subunit 1 or voltage-gated potassium channel subunit Kv9.1, is a modulatory alpha subunit of voltage-gated potassium channel that mediates neuropathic pain following nerve injury. It can form functional heterotetrameric channels with KCNB1 (also known as Kv2.1) and KCNB2 (also known as Kv2.2), and further modulates the delayed rectifier voltage-gated potassium channel activation and deactivation rates of KCNB1 and KCNB2. Voltage-gated potassium (Kv) channels are composed of alpha subunits, which form the actual conductance pore, and cytoplasmic beta subunits, which are auxiliary proteins that associate with alpha subunits to modulate the activity of the Kv channel. KCNS1 is a regulatory alpha subunit that cannot form a functional homo-tetrameric channel. It forms hetero-tetrameric channels (with other functional alpha subunits) through its BTB/POZ domain, also known as tetramerization (T1) domain, which is a versatile protein-protein interaction motif.
Statistics
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PSSM-Id: 349733
Aligned: 6 rows
Threshold Bit Score: 217.066
Created: 12-Sep-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative tetramer interface [polypeptide binding site]
Evidence:
  • Comment:based on the tetramer structures of Rattus norvegicus voltage-gated potassium channels Kv1.2 and Kv4.3

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # ########  #                                   # ##  #  #   #  #  # #       
XP_001232667  18 ININVGGLRRRLSPSALSKFPDTRLGRLlsCDSEESILQLCDDYDvsAREFYFDRNPGFFLYVLHFYQTGKLHVMDELCV 97  chicken
XP_002938059  18 ININVGGMKKRISPITLLQFPDTRLGRLlsCESEESILQICDDYDlvSKEFYFDRNPGLFPYVLYFYETGKLHMMDDLCA 97  tropical clawed...
KKF30884      19 VHVNVGGLKRSLCSSTLKKFPDTRLGKLlaCDSEEDILQVCDDYDvqQQEFYFDRNPGLFPYVLHFYQTGKLHIMEELCV 98  large yellow cr...
XP_006006901  18 IKINVGGLKRRLSSSTLSKFPDTRLGRLlsCDSEESILQICDDYDviEKEFYFDRNPGLFSYVLHFYQTGKLHIMEDLCV 97  coelacanth
XP_007910079  18 INVNVGGLKRSLSSSTLSRFPDTRLGQLlaCESEESILQICDDYDvsAREFYFDRNPGLFPYVLHFYQTGKLHIMEELCV 97  elephant shark
OCT62158      18 ININVGGMKKRVSPITLSQFPDTRLGRLlsCESEESILQICDDYDlvSKEFYFDRNPGLFPYVLYFYETGKLHMMDDLCA 97  African clawed ...
Feature 1        ##  #                     
XP_001232667  98 FSFSQEIEYWGINEFFLDSCCSYRYH 123 chicken
XP_002938059  98 FSFSQEIEYWGISEFFLDSCCSYRYH 123 tropical clawed frog
KKF30884      99 FSFSQEIEYWGINEFFLDSCCSYRYH 124 large yellow croaker
XP_006006901  98 FSFSQEIEYWGINEFFLDSCCSYRYH 123 coelacanth
XP_007910079  98 FSFSQEIEYWGINEFFLDTCCSYRYH 123 elephant shark
OCT62158      98 FSFSQEIEYWGISEFFLDSCCSYRYH 123 African clawed frog

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