2NZ0,2I2R


Conserved Protein Domain Family
BTB_POZ_KCND3

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cd18419: BTB_POZ_KCND3 
Click on image for an interactive view with Cn3D
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily D member 3 (KCND3)
KCND3, also called voltage-gated potassium channel subunit Kv4.3, is a pore-forming subunit of voltage-gated rapidly inactivating A-type potassium channels. Mutations in KCND3 cause spinocerebellar ataxia. Voltage-gated potassium (Kv) channels are composed of alpha subunits, which form the actual conductance pore, and cytoplasmic beta subunits, which are auxiliary proteins that associate with alpha subunits to modulate the activity of the Kv channel. KCND3 is an alpha subunit that forms functional homo- or hetero-tetrameric channels (with other Kv4/KCND alpha subunits) through its BTB/POZ domain, also known as tetramerization (T1) domain, which is a versatile protein-protein interaction motif. It is modulated by cytoplasmic KChIPs/KCNIPs (Kv-channel interacting proteins), which are small calcium binding proteins with EF-hand-like domains.
Statistics
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PSSM-Id: 349726
Aligned: 7 rows
Threshold Bit Score: 304.203
Created: 12-Sep-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 31 residues -Click on image for an interactive view with Cn3D
Feature 1:tetramer interface [polypeptide binding site]
Evidence:
  • Structure:2I2R: Interface between subunits in Rattus norvegicus Kv4.3 homotetramer; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                           #   # ########  #                         # #
2NZ0_B         1 AAWLPFARAAAIGWMPVANCPMPLAPADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFFD 80  human
2I2R_A         7 AAWLPFARAAAIGWMPVANCPMPLAPADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFFD 86  Norway rat
2738111        6 AAWLPFARAAAIGWMPVANCPMPLAPADKNKKQDEVIILNVSGRRFQTWRTTLERYPDNLLGRPEKEFFFNEETKEYFFD 85  African clawed ...
NP_989657      6 AAWLPFARAAAIGWMPVANCPMPLAPTEKNKRQDELIILNVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFFD 85  chicken
Q9UK17         6 AAWLPFARAAAIGWMPVANCPMPLAPADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFFD 85  human
NP_956096      6 AAWLPFARAAAIGWMPVANLPMPVAPSNKNKRQDELIILNVSGRRFQTWRNTLDRYPDTLLGSSEKEFFFNEETREYFFD 85  zebrafish
XP_007897790   6 AAWLPFARAAAIGWMPVANCPMPLAPGDKHKKQDELLVLNVSGRRFQTWRNTLERFPDTLLGSTEKEFFFNDESKEYFFD 85  elephant shark
Feature 1        ## #  #   #  ## # #  #### ##  #              ##           
2NZ0_B        81 RDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKDRKREN 138 human
2I2R_A        87 RDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKDRKREN 144 Norway rat
2738111       86 RDPEVFRSILNFYRTGKLHYPRYEYISAYDEELSFYGILPEIIGDCCYEEYKDRKREN 143 African clawed frog
NP_989657     86 RDPEVFRCILNFYRTGKLHYPRYECISAYDEELAFYGILPEIIGDCCYEEYKDRKREN 143 chicken
Q9UK17        86 RDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKDRKREN 143 human
NP_956096     86 RDPDVFRSILNFYRTGKLHYPRYECISAYDEELAFFGIIPEIISDCCYEEYKDRKREN 143 zebrafish
XP_007897790  86 RDPDIFRNVLNFYRTGKLHYPRHECISAYDEELSFFGIIPEIIGDCCYEEYKDRRREN 143 elephant shark

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