Conserved Protein Domain Family
BTB_POZ_KCND1

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cd18417: BTB_POZ_KCND1 
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily D member 1 (KCND1)
KCND1, also called voltage-gated potassium channel subunit Kv4.1, is a pore-forming subunit of voltage-gated rapidly inactivating A-type potassium channels. It may contribute to I (To) current in heart and I (Sa) current in neurons. Its properties are modulated by interactions with other alpha subunits and with regulatory subunits. Voltage-gated potassium (Kv) channels are composed of alpha subunits, which form the actual conductance pore, and cytoplasmic beta subunits, which are auxiliary proteins that associate with alpha subunits to modulate the activity of the Kv channel. KCND1 is an alpha subunit that forms functional homo- or hetero-tetrameric channels (with other Kv4/KCND alpha subunits) through its BTB/POZ domain, also known as tetramerization (T1) domain, which is a versatile protein-protein interaction motif. It is modulated by cytoplasmic KChIPs/KCNIPs (Kv-channel interacting proteins), which are small calcium binding proteins with EF-hand-like domains.
Statistics
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PSSM-Id: 349724
Aligned: 5 rows
Threshold Bit Score: 314.583
Created: 12-Sep-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteputativeputative beta
Feature 1: Zn binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:H C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structure of Rattus norvegicus KCND2 with bound Zn2+ ion
  • Comment:Zn binding occur in a HX(5)CX(20)CC sequence motif that is highly conserved among all Shab, Shaw and Shal subfamily members, but is not found in Shaker subfamily members

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
Q9NSA2         6 ATWLPFARAAAVGWLPLAQQPLPPAPGVKASRgDEVLVVNVSGRRFETWKNTLDRYPDTLLGSsEKEFFYDADSGEYFFD 85  human
XP_002943981   6 ATWLPFARAAAVGWLPLAKRPMPKPPSDKRMKsDEILVVNVSGRKFQTWKNTLDRYPDTLLGStEKDFFFNQDTQEYFFD 85  tropical clawed...
NP_001119942   6 ATWLPFARAAAVGWLPLAKKTMPKPPIDKKNRnDEILFVNVSGLRFQTWKNTLDRYPDTLLGSsEKEFFYNEDTQEYFFD 85  zebrafish
XP_020653332   6 AAWLPFARAAAVGWLPLAKKPMPKPPIDKKRRtDEILVVNVSGRRFQTWKNTLDRYPDTLLGSsEKEFFYDEDSTEYFFD 85  central bearded...
XP_006005474   6 ATWLPFARAAAVGWLPLAKKNMPRPPSDKKRRnDEILVVNVSGRRFQTWKNTLDRYPDTLLGSsEKEFFFNEETQEYFFD 85  coelacanth
Feature 1                          #     #                    ##           
Q9NSA2        86 RDPDMFRHVLNFYRTGRLHCPRqECIQAFDEELAFYGLvPELVGDCCLEEYRDRKKEN 143 human
XP_002943981  86 RDPEMFRHILNFYRTGKLHYPRhECIQAFDEELSFYGIiPEIIGDCCLEEYRDRKKEN 143 tropical clawed frog
NP_001119942  86 RDPEMFRHILNFYRTGRLHYPRqECIQAFDEELAFYGIvPDIIGDCCMEEYRDRKKEN 143 zebrafish
XP_020653332  86 RDPEMFRHILNFYRTGRLHYPRhECIQAFDEELSFYGIiPELIGDCCLEEYRDRKKEN 143 central bearded dragon
XP_006005474  86 RDPEMFRHILNFYRTGKLHYPRhECISAFDEELSFFGIiPEIIGDCCLEEYRDRKKEN 143 coelacanth

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