1EXB


Conserved Protein Domain Family
BTB_POZ_KCNA1

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cd18402: BTB_POZ_KCNA1 
Click on image for an interactive view with Cn3D
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily A member 1 (KCNA1)
KCNA1 is also called voltage-gated K(+) channel HuKI, voltage-gated potassium channel HBK1, or voltage-gated potassium channel subunit Kv1.1. It mediates transmembrane potassium transport in excitable membranes, primarily in the brain and the central nervous system, but also in the kidney. It is involved in the regulation of the membrane potential and nerve signaling, and prevents neuronal hyperexcitability. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a tetrameric potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient. Voltage-gated potassium (Kv) channels are composed of alpha subunits, which form the actual conductance pore, and cytoplasmic beta subunits, which are auxiliary proteins that associate with alpha subunits to modulate the activity of the Kv channel. KCNA1 is an alpha subunit that forms functional homo- or hetero-tetrameric channels (with other Kv1/KCNA alpha subunits) through its BTB/POZ domain, also known as tetramerization (T1) domain, which is a versatile protein-protein interaction motif.
Statistics
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PSSM-Id: 349710
Aligned: 9 rows
Threshold Bit Score: 192.558
Created: 14-Sep-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
beta subunitputative
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:beta subunit interface [polypeptide binding site]
Evidence:
  • Structure:1EXB: Rattus norvegicus potassium channel Kv1.1 in complex with KV Beta2 Protein, contacts at 4A.
  • Comment:Beta subunts are auxiliary proteins that associate with the alpha subunit (Kv1.1), sometimes in an alpha4beta4 stoichiometry, and modulate the activity of the Kv channel.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #                                #  # ## # #                            
1EXB_E         3 DHDDHECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNV 82  Norway rat
Q09470        29 DHDDHECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNV 108 human
XP_005163101  26 DHDDHECCERVVINIAGLRFETQLKTLAQFPETLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPANV 105 zebrafish
XP_004912859  26 DQDDHECCERVVINVAGLRFETQLKTLSQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNV 105 tropical clawed...
EMP38443      27 AHDDHECCERVVINIAGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNV 106 green sea turtle
NP_001280068  26 DHEDHECCERVVINISGLRFETQLKTLSQFPNTMLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNV 105 elephant shark
KFO83083      27 AHDDHECCERVVINIAGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNV 106 Buceros rhinoce...
KTF85290      24 SQYSPECCERVVINISGLRFETQLKTLAQFPDTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNV 103 common carp
XP_014340135  26 DHDDHECCERVVINIAGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNV 105 coelacanth
Feature 1                          
1EXB_E        83 PLDMFSEEIKFYELGEEA 100 Norway rat
Q09470       109 PLDMFSEEIKFYELGEEA 126 human
XP_005163101 106 PLDMFSEEIKFYELGVEA 123 zebrafish
XP_004912859 106 PLDMFSEEIKFYELGEEA 123 tropical clawed frog
EMP38443     107 PLDMFSEEIKFYELGEEA 124 green sea turtle
NP_001280068 106 PLDMFSEEIKFYELGEEA 123 elephant shark
KFO83083     107 PLDMFSEEIKFYELGEEA 124 Buceros rhinoceros silvestris
KTF85290     104 PLDMFSEEIKFYELGEEA 121 common carp
XP_014340135 106 PLDMFSEEIKFYELGEEA 123 coelacanth

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