2HA8


Conserved Protein Domain Family
SpoU-like_TRM3-like

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cd18091: SpoU-like_TRM3-like 
Click on image for an interactive view with Cn3D
SAM-dependent tRNA methylase related to TRM3
Yeast tRNA (guanosine(18)-2'-O)-methyltransferase TRM3 catalyzes the formation of 2'-O-methylguanosine at position 18 (Gm18) in various tRNAs. TRM3 is similar to C-terminal domain of TAR (HIV-1) RNA binding protein 1 (TARBP1), a protein binding to TAR, which functions as a RNA regulatory signal by forming a stable stem-loop structure to which transactivator protein Tat binds. The role of TARBP1 is believed to be to disengage RNA polymerase II from TAR during transcriptional elongation. TRM3 and the C-terminal methyltransferase domain of TARBP1 are members of the SPOUT methyltransferase superfamily.
Statistics
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PSSM-Id: 349964
Aligned: 43 rows
Threshold Bit Score: 163.085
Created: 12-May-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
SAM bindingdimer interface
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:SAM binding site [chemical binding site]
Evidence:
  • Structure:2HA9; Homo sapiens TarBP1 with bound SAM, contacts 4A
  • Structure:18412263

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
2HA8_A      27 LIVVASLIDKPTNLGGLCRTCEVFGaSVLVVGSlqcisdkqf-qhlsvsaeqWLPLVEVkp--pqLIDYLQQKKteGYTI 103  human
EON69774   911 LIIIASLIANPHNLGGLSRISEIFGaASLHLRTtavltdrdf-lavsvsshlHLSIHALpptpssLLPFLRERKgeGYTV 989  Coniosporium apo...
Q07527    1286 LIVVSSLVDKPPNLGGICRLCDVLGvGLLTVQDikvknhpqf-knvavtadrWMPMEEVal--deIASFMKEKKkeGYTL 1362 Saccharomyces ce...
EWC48557   501 IEVVASLVDNHYNLGGVCRVSELSGvSKLYLGNkattlksreftslsvssetWLPIEEVkr--adVSQLLARKRqeGYSI 578  Drechslerella st...
CCX34712  1322 IIMCASLIDKGFNLGGLSRVSEIMGvKTLTIPSkavmkekef-aavsvhsesWLDIQEVqv--pdITAFLREKRmeGYEA 1398 Pyronema omphalo...
EDY61800    46 LYAAPLWPLHGANLGTLARTCDAVG-ACITVPRfpwvpeala-rgntlrkpvCTHRTGD------PLGWLARQRerGARI 117  Streptomyces pri...
EAQ78376    21 LIVACCQFRSNVNLSRIVRAASCCAvSRVIVTGnmkidpk-----iardgaeKLPISRHr----sLPPVLKELKseGYRL 91   Blastopirellula ...
EDM28573    21 FIIACSPLRSHVNLSTIMRMAGCSGvSQVIATGnakvnsk-----iardgaeQVNLVTKn----sLPPVLKKLKqdGYTL 91   Lentisphaera ara...
CAI59983    19 LVIVCAPLRTKANLSSIVRTAGCCGvKRVIACGsaaidrk-----vardgadHVELELRr----tLAPVLKKLSaeGYRL 89   Streptomyces ten...
KGF71782     6 LIICATLVQNPANLGGLCRTAEAFRlAALVTGDasmtqraaf-rdlavsahrWQPLHICtp--leLPEWILTQQqsGYRA 82   Neosynechococcus...
Feature 1        ###                       ##### #            ### #    ### #  #        
2HA8_A     104 IGVEQTAkSLDLTQy----cFPEKSLLLLGNEREGIPANLIQqlDVCVEIPQQGIIRSLNVHVSGALLIWEY 171  human
EON69774   990 VGIEQTDaSFVLGApg--tsVPRKAVLVLGSEREGIPGWLLSemDACVEIGQVGRTRSLNVQTAAGCVLFEW 1059 Coniosporium apollinis C...
Q07527    1363 IGLEQTDkSVKLDNnf---qFPKKSLILLGTEAFGIPGTLLSelDLCLEIQQFGVIRSMNIQTATAVIVHSY 1431 Saccharomyces cerevisiae...
EWC48557   579 VGIEQTDrSVILGSkd--feFPKKTVLVIGAEKTGIPPDLLAemDICVEVKQFGETRSMNVQTAAAVVLYEY 648  Drechslerella stenobroch...
CCX34712  1399 VGVEQTDrSVVLGSeecdkkWSNKVLLLMGTEKFGIPAELLGelDWCVEIPQKGMTRSMNVQTAAAVVLYDV 1470 Pyronema omphalodes CBS ...
EDY61800   118 VGVELADeAVRLADla---pARSPTVMVLGHEQHGIPPEALDllDECVEIPMVGTGSSLNVAVAGSLALYKL 186  Streptomyces pristinaesp...
EAQ78376    92 VGLEQTTnSQDIHHf----sFVRNTVLVIGNERQGTPDDVLRllDDVVEIPVYGMPYSFNVATATCMALYEF 159  Blastopirellula marina D...
EDM28573    92 VGLEQTTnSNNLHDf----dFPHKCVLVVGAEREGLSQDCLDclDYTVEIPVWGLPYSYNVASATSLAVYEY 159  Lentisphaera araneosa HT...
CAI59983    90 VALEQTSnSTSLHDf----aFPRKTALVIGNERTGLDDEELKlvDDCTEIPVWGMPHSYNVATATAMAMYEY 157  Streptomyces tenjimariensis
KGF71782    83 IALEAHPrAVPLPEf----rFPQSTVLILGRELTGIPPEILDqcDQSVVIPQAGMVESLNVQTAAAIAIYEY 150  Neosynechococcus sphagni...

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