4ON9,3TBK,4A2P,4A2Q,4A2W,3TMI,3ZD6,3ZD7,2YKG,4BPB,4AY2


Conserved Protein Domain Family
DEXHc_RIG-I_DDX58

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cd18073: DEXHc_RIG-I_DDX58 
DEXH-box helicase domain of RIG-I
RIG-I (Retinoic acid-inducible gene I protein), also called DEAD box protein 58 (DDX58), is a pathogen-recognition receptor that recognizes viral 5'-triphosphates carrying double-stranded RNA. Upon binding to these microbe-associated molecular patterns (MAMPs), RIG-I forms oligomers and promotes downstream processes that result in type I interferon production and induction of an antiviral state. The optimal ligand for RIG-I has been found to be base-paired or double-stranded RNA (dsRNA) molecules containing a 5' triphosphate (5'-ppp-dsRNA). RIG-I contains two N-terminal caspase activation and recruitment domains (CARDs), which are required for interaction with IPS-1, a superfamily 2 helicase/translocase/ATPase (SF2) domain and a C-terminal regulatory/repressor domain (RD). RIG-I is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350831
Aligned: 14 rows
Threshold Bit Score: 370.305
Created: 18-Jul-2017
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:3TBK; Mus musculus RIG-I with bound AMP-PNP, contacts at 4A
  • Structure:3TMI: Human RIG-I with bound Mg.ADP, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     ####  #                 ########                                                
4ON9_A     28 FKPRNYQLELALPamkGKNTIICAPTGCGKTFVSLLICEHHLKkfpqgqkgkVVFFANQIPVYEQQKSVFSKYferhgyR 107  human
3TBK_A      3 LKPRNYQLELALPakkGKNTIICAPTGCGKTFVSLLICEHHLKkfpcgqkgkVVFFANQIPVYEQQATVFSRYferlgyN 82   house mouse
4A2P_A      6 KKARSYQIELAQPainGKNALICAPTGSGKTFVSILICEHHFQnmpagrkakVVFLATKVPVYEQQKNVFKHHferqgyS 85   mallard
4A2Q_A    247 KKARSYQIELAQPainGKNALICAPTGSGKTFVSILICEHHFQnmpagrkakVVFLATKVPVYEQQKNVFKHHferqgyS 326  mallard
4A2W_A    247 KKARSYQIELAQPainGKNALICAPTGSGKTFVSILICEHHFQnmpagrkakVVFLATKVPVYEQQKNVFKHHferqgyS 326  mallard
3ZD6_A     12 FKPRNYQLELALPamkGKNTIICAPTGCGKTFVSLLICEHHLKkfpngqkgkVVFFANQIPVYEQNKSVFSKYferhgyR 91   human
3ZD7_A     12 FKPRNYQLELALPamkGKNTIICAPTGCGKTFVSLLICEHHLKkfpqgqkgkVVFFANQIPVYEQNKSVFSKYferhgyR 91   human
2YKG_A     12 FKPRNYQLELALPamkGKNTIICAPTGCGKTFVSLLICEHHLKkfpqgqkgkVVFFANQIPVYEQNKSVFSKYferhgyR 91   human
4BPB_A     12 FKPRNYQLELALPamkGKNTIICAPTGCGKTFVSLLICEHHLKkfpqgqkgkVVFFANQIPVYEQNKSVFSKYferhgyR 91   human
4AY2_A      3 FKPRNYQLELALPamkGKNTIICAPTGCGKTFVSLLICEHHLKkfpqgqkgkVVFFANQIPVYEQNKSVFSKYferhgyR 82   human
Feature 1                                                        #                            
4ON9_A    108 VTGISGAtaenvpveqivennDIIILTPQILVNnlkkgtipslsifTLMIFDECHNtsKQHPYNMIMFNyldqklggssg 187  human
3TBK_A     83 IASISGAtsdsvsvqhiiednDIIILTPQILVNnlnngaipslsvfTLXIFDECHNtsKNHPYNQIXFRyldhklgesrd 162  house mouse
4A2P_A     86 VQGISGEnfsnvsvekviedsDIIVVTPQILVNsfedgtltslsifTLMIFDECHNttGNHPYNVLMTRyleqkf-nsas 164  mallard
4A2Q_A    327 VQGISGEnfsnvsvekviedsDIIVVTPQILVNsfedgtltslsifTLMIFDECHNttGNHPYNVLMTRyleqkf-nsas 405  mallard
4A2W_A    327 VQGISGEnfsnvsvekviedsDIIVVTPQILVNsfedgtltslsifTLMIFDECHNttGNHPYNVLMTRyleqkf-nsas 405  mallard
3ZD6_A     92 VTGISGAtaenvpveqivennDIIILTPQILVNnlkkgtipslsifTLMIFDECHNtsKQHPYNMIMFNyldqklggssg 171  human
3ZD7_A     92 VTGISGAtaenvpveqivennDIIILTPQILVNnlkkgtipslsifTLMIFDECHNtsKQHPYNMIMFNyldqklggssg 171  human
2YKG_A     92 VTGISGAtaenvpveqivennDIIILTPQILVNnlkkgtipslsifTLMIFDECHNtsKQHPYNMIMFNyldqklggssg 171  human
4BPB_A     92 VTGISGAtaenvpveqivennDIIILTPQILVNnlkkgtipslsifTLMIFDECHNtsKQHPYNMIMFNyldqklggssg 171  human
4AY2_A     83 VTGISGAtaenvpveqivennDIIILTPQILVNnlkkgtipslsifTLMIFDECHNtsKQHPYNMIMFNyldqklggssg 162  human
Feature 1                                               
4ON9_A    188 plPQVIGLTASvgvgdakntdealDYICKLCAsldASVIATV 229  human
3TBK_A    163 plPQVVGLTASvgvgdaktaeeaxQHICKLCAaldASVIATV 204  house mouse
4A2P_A    165 qlPQILGLTASvgvgnaknieetiEHICSLCSyldIQAISTV 206  mallard
4A2Q_A    406 qlPQILGLTASvgvgnaknieetiEHICSLCSyldIQAISTV 447  mallard
4A2W_A    406 qlPQILGLTASvgvgnaknieetiEHICSLCSyldIQAISTV 447  mallard
3ZD6_A    172 plPQVIGLTASvgvgdakntdealDYICKLCAsldASVIATV 213  human
3ZD7_A    172 plPQVIGLTASvgvgdakntdealDYICKLCAsldASVIATV 213  human
2YKG_A    172 plPQVIGLTASvgvgdakttdealDYICKLCAsldASVIATV 213  human
4BPB_A    172 plPQVIGLTASvgvgdakttdealDYICKLCAsldASVIATV 213  human
4AY2_A    163 plPQVIGLTASvgvgdakntdealDYICKLCAsldASVIATV 204  human

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