Conserved Protein Domain Family
DEADc_DDX17

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cd18050: DEADc_DDX17 
DEAD-box helicase domain of DEAD box protein 17
DDX17 (also called DEAD Box Protein P72 or DEAD Box Protein P82) has a wide variety of functions including regulating the alternative splicing of exons exhibiting specific features such as the inclusion of AC-rich alternative exons in CD44 transcripts, playing a role in innate immunity, and promoting mRNA degradation mediated by the antiviral zinc-finger protein ZC3HAV1 in an ATPase-dependent manner. DDX17 synergizes with DDX5 and SRA1 RNA to activate MYOD1 transcriptional activity and is involved in skeletal muscle differentiation. DDX17 is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350808
Aligned: 5 rows
Threshold Bit Score: 581.199
Created: 18-Jul-2017
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
ATP bindingDEAD box
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:based on structures of other members of the DEAD-box helicase family with bound ADP/AMP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
Q92841       109 KFGNPGERLRKKKWDLseLPKFEKNFYvEHPEVARltpyEVDELRRKKEITVRGgdvCPKPVfaFHHANFPQYVMDVLMD 188 human
XP_416260     28 KFGNPGERLRKKKWDLneLPKFEKNFYvEHPEVARltpyEVEELRRKKEITIRGmegCPKPVfaFHQCSFPQYVMDALMD 107 chicken
NP_001016781  21 KFGNPGERLRKKRWDLseLPKFEKNFYtEHPEVARmtqhDVEELRRKKEITIRGv-nCPKPIygFHQANFPQYVLDVLID 99  tropical clawed...
XP_001923830  34 KFGNPGDRLRKKKWDLdqLPKFEKNFYnENPEVHHmsqyDVEEYRRKREITVRGs-gCPKPVtnFHQAQFPQYVMDVLLQ 112 zebrafish
NP_001082679  21 KFGNPGERLRKKRWDLneLPKFEKNFYtEHPEVARmtqhDVEELRRKKEITIRGv-nCPKPLyaFHQANFPQYVLDVLLD 99  African clawed ...
Feature 1          # ###  #                 ########                                             
Q92841       189 QHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 268 human
XP_416260    108 QNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 187 chicken
NP_001016781 100 QRFKEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAMVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 179 tropical clawed...
XP_001923830 113 QNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAFDYG 192 zebrafish
NP_001082679 100 QRFKEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAMVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYG 179 African clawed ...
Feature 1                                                                                        
Q92841       269 KcSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 348 human
XP_416260    188 KcSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 267 chicken
NP_001016781 180 KsSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 259 tropical clawed...
XP_001923830 193 KsSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 272 zebrafish
NP_001082679 180 KtSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 259 African clawed ...
Feature 1                                        
Q92841       349 DRQTLMWSATWPKEVRQLAEDFLrDYTQINVG 380 human
XP_416260    268 DRQTLMWSATWPKEVRQLAEDFLqDYVQINVG 299 chicken
NP_001016781 260 DRQTLMWSATWPKEVRQLAEDFLrDYVQINIG 291 tropical clawed frog
XP_001923830 273 DRQTLMWSATWPKEVRQLAEDFLqDYVQINIG 304 zebrafish
NP_001082679 260 DRQTLMWSATWPKEVRQLAEDFLrDYSQINIG 291 African clawed frog

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