3FMP,3EWS,3G0H,3FHT,3FMO,3FHC


Conserved Protein Domain Family
DEADc_DDX19

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cd18047: DEADc_DDX19 
Click on image for an interactive view with Cn3D
DEAD-box helicase domain of DEAD box protein 19
DDX19 is an RNA helicase involved in both mRNA (mRNA) export from the nucleus into the cytoplasm and in mRNA translation. DDX19 functions in the nucleus in resolving RNA:DNA hybrids (R-loops). Activation of a DNA damage response pathway dependent upon the ATR kinase, a major regulator of replication fork progression, stimulates translocation of DDX19 from the cytoplasm into the nucleus. Only nuclear Ddx19 is competent to resolve R-loops. DDX19 is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350805
Aligned: 7 rows
Threshold Bit Score: 374.057
Created: 30-Jan-2014
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:3G0H; Homo sapiens DDX19 with bound MgANP, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                            # #    #                   #######                          
3FMP_B        92 KSFEELRLKPQLLQGVYamGFNRPSkIQENALPLMLAepPQNLIAQSQSGTGKTAAFVLAMLSQVepankypQCLCLSPT 171 human
3EWS_A        62 KSFEELRLKPQLLQGVYamGFNRPSkIQENALPLMLAepPQNLIAQSQSGTGKTAAFVLAMLSQVepankypQCLCLSPT 141 human
3G0H_A        41 KSFEELRLKPQLLQGVYamGFNRPSkIQENALPLMLAepPQNLIAQSQSGTGKTAAFVLAMLSQVepankypQCLCLSPT 120 human
3FHT_A        25 KSFEELRLKPQLLQGVYamGFNRPSkIQENALPLMLAepPQNLIAQSQSGTGKTAAFVLAMLSQVepankypQCLCLSPT 104 human
3FMO_B        92 KSFEELRLKPQLLQGVYamGFNRPSkIQENALPLMLAepPQNLIAQSQSGTGKTAAFVLAMLSQVepankypQCLCLSPT 171 human
3FHC_B        25 KSFEELRLKPQLLQGVYamGFNRPSkIQENALPLMLAepPQNLIAQSQSGTGKTAAFVLAMLSQVepankypQCLCLSPT 104 human
NP_001122187  84 KTFEELRLKPQLLKGVYemGFNRPSkIQENALPMMLAepPQNLIAQSQSGTGKTAAFVLAMLSHVdpackwsQCLCISPT 163 zebrafish
Feature 1                                                                               #        
3FMP_B       172 YELALQTGKVIEQMGKFyPELKLAYAVRGNKLergqkiSEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIatQ 251 human
3EWS_A       142 YELALQTGKVIEQMGKFyPELKLAYAVRGNKLergqkiSEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIatQ 221 human
3G0H_A       121 YELALQTGKVIEQMGKFyPELKLAYAVRGNKLergqkiSEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIatQ 200 human
3FHT_A       105 YELALQTGKVIEQMGKFyPELKLAYAVRGNKLergqkiSEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIatQ 184 human
3FMO_B       172 YELALQTGKVIEQMGKFyPELKLAYAVRGNKLergqkiSEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIatQ 251 human
3FHC_B       105 YELALQTGKVIEQMGKFyPELKLAYAVRGNKLergqkiSEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIatQ 184 human
NP_001122187 164 YELALQTGKVIEQMGKFyPEVTLAYAVRGHRMergvriKDQIVIGTPGTVLDWCIKLKLIDPKKIKVFVLDEADVMIatQ 243 zebrafish
Feature 1                               #                     
3FMP_B       252 GHQDQSIRIQRMLPrNCQMLLFSATFEDSVWKFAQKVVPDPNVIK 296 human
3EWS_A       222 GHQDQSIRIQRMLPrNCQMLLFSATFEDSVWKFAQKVVPDPNVIK 266 human
3G0H_A       201 GHQDQSIRIQRMLPrNCQMLLFSATFEDSVWKFAQKVVPDPNVIK 245 human
3FHT_A       185 GHQDQSIRIQRMLPrNCQMLLFSATFEDSVWKFAQKVVPDPNVIK 229 human
3FMO_B       252 GHQDQSIRIQRMLPrNCQMLLFSATFEDSVWKFAQKVVPDPNVIK 296 human
3FHC_B       185 GHQDQSIRIQRMLPrNCQMLLFSATFEDSVWKFAQKVVPDPNVIK 229 human
NP_001122187 244 GHQDQSIRIQRMLPkGCQMLLFSATFEDSVWKFAERVVPDPNIIK 288 zebrafish

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