2J0U,2J0U,2HYI,2J0Q,2HXY,2XB2


Conserved Protein Domain Family
DEADc_EIF4AIII_DDX48

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cd18045: DEADc_EIF4AIII_DDX48 
Click on image for an interactive view with Cn3D
DEAD-box helicase domain of eukaryotic initiation factor 4A-III
Eukaryotic initiation factor 4A-III (EIF4AIII, also known as DDX48) is part of the exon junction complex (EJC) that plays a major role in posttranscriptional regulation of mRNA. EJC consists of four proteins (eIF4AIII, Barentsz [Btz], Mago, and Y14), mRNA, and ATP. DDX48 is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350803
Aligned: 15 rows
Threshold Bit Score: 337.517
Created: 18-Jul-2017
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:2J0Q; Homo sapiens DDX48 with bound Mg-ATP, contact 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     #               # #####  #                 ########                             
2J0U_A      3 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLdiqvrETQALILAPTRELA 82  human
2HYI_C     40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLdiqvrETQALILAPTRELA 119 human
2J0Q_A     39 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLdiqvrETQALILAPTRELA 118 human
2HXY_A     18 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLdiqvrETQALILAPTRELA 97  human
2XB2_A     40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLdiqvrETQALILAPTRELA 119 human
CAK57066   24 FESMKLRKELLRGINAFGFIRPLEVQQRALVPLIQGRDVVIQNFRSTGKTTVMSLSVLSIFdlsvkKIQVLILQKTRKLT 103 Paramecium tetraur...
1352438    23 FEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIdlsvrDTQALILSPTRELA 102 Schizosaccharomyce...
Q4P184     26 FDAMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSIdttlrETQALVLSPTRELA 105 Ustilago maydis 521
EAN79829   31 FEAMGLKKDLLHGMYGYGYKKPTAIQKRFVAPFLQSRDLVAQASSGSGKTSAFCICLLQASeptlrETQGLVLSPTRELA 110 Trypanosoma brucei
Q55D61     34 FESMGLREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQCVevnvrSPQVLILSPTRELA 113 Dictyostelium disc...
Feature 1                                                                        ##           
2J0U_A     83 VQVQKGLLALGdymnVQCHACIGGtnvGEDIRKLDYGQHVVAGTPGRVFDMIRRRslRTRAIKMLVLDEADEMLnKGFKE 162 human
2HYI_C    120 VQIQKGLLALGdymnVQCHACIGGtnvGEDIRKLDYGQHVVAGTPGRVFDMIRRRslRTRAIKMLVLDEADEMLnKGFKE 199 human
2J0Q_A    119 VQIQKGLLALGdymnVQCHACIGGtnvGEDIRKLDYGQHVVAGTPGRVFDMIRRRslRTRAIKMLVLDEADEMLnKGFKE 198 human
2HXY_A     98 VQIQKGLLALGdymnVQCHACIGGtnvGEDIRKLDYGQHVVAGTPGRVFDMIRRRslRTRAIKMLVLDEADEMLnKGFKE 177 human
2XB2_A    120 VQIQKGLLALGdymnVQCHACIGGtnvGEDIRKLDYGQHVVAGTPGRVFDMIRRRslRTRAIKMLVLDEADEMLnKGFKE 199 human
CAK57066  104 EENAGLIMALGkflnVSIHACSEGnsiQDDISVVQQGVQIVLGTPDRVFELVQRKeiSFAHLKMIILDEADEMLiDESKS 183 Paramecium tetraur...
1352438   103 VQIQNVVLALGdhmnVQCHACIGGtsvGNDIKKLDYGQHVVSGTPGRVTDMIRRRnlRTRNVKMLILDEADELLnQGFKE 182 Schizosaccharomyce...
Q4P184    106 IQIQSVVLALGdylnVQCHACIGGtsvGEDIRKLDYGQHIVSGTPGRVYDMIRRRhlRTKNIKMLILDESDELLnMGFKD 185 Ustilago maydis 521
EAN79829  111 LQTQDLCNNIGhymgISAYAAIGGksiEDDLRRLESGVQIVSGTPGRVFDMIKRRhlRVNHLKTLVLDEADEMLgKGFKA 190 Trypanosoma brucei
Q55D61    114 QQIQKVALALSefmnIQVHACVGGknlSDDVKKLETGVHIVSGTPGRVLDMITRKslPTRHIKMMILDEADEMLsLGFQQ 193 Dictyostelium disc...
Feature 1                                              
2J0U_A    163 QIYDVYRYLPPaTQVVLISATLPHEILEMTNKFMTDPIRIL 203 human
2HYI_C    200 QIYDVYRYLPPaTQVVLISATLPHEILEMTNKFMTDPIRIL 240 human
2J0Q_A    199 QIYDVYRYLPPaTQVVLISATLPHEILEMTNKFMTDPIRIL 239 human
2HXY_A    178 QIYDVYRYLPPaTQVVLISATLPHEILEMTNKFMTDPIRIL 218 human
2XB2_A    200 QIYDVYRYLPPaTQVVLISATLPHEILEMTNKFMTDPIRIL 240 human
CAK57066  184 LVYCIFKYLPPkPQYVLVTATLSQDILDFIEKFFNNPLVIM 224 Paramecium tetraurelia
1352438   183 QIYDIYRYLPPgTQVVVVSATLPQDVLEMTNKFTTNPVRIL 223 Schizosaccharomyces pombe 972h-
Q4P184    186 QIYDVYRYLPPsTQVVLLSATLPQDVLEMTSKFMTDPVRIL 226 Ustilago maydis 521
EAN79829  191 QIHDIYRMIPP-LQVVLVSATLPVDVLDMTEKFMTEPVRIL 230 Trypanosoma brucei
Q55D61    194 QINDVYRYLPNgTQIVLVSATLTQDVVSMTEKFMTKPVRIL 234 Dictyostelium discoideum

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