5IVW,5SVA,5FMF


Conserved Protein Domain Family
DEXHc_XPB

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cd18029: DEXHc_XPB 
Click on image for an interactive view with Cn3D
DEXH-box helicase domain of TFIIH XPB subunit and similar proteins
TFIIH basal transcription factor complex helicase XPB subunit (also known as DNA excision repair protein ERCC-3 or TFIIH 89 kDa subunit) is the ATP-dependent 3'-5' DNA helicase component of the core-TFIIH basal transcription factor, involved in nucleotide excision repair (NER) of DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II. XPB is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350787
Aligned: 24 rows
Threshold Bit Score: 216.013
Created: 17-May-2011
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:based on the structure of Escherichia coli EcoR124I HsdR with bound Mg.ATP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                      ##  #                       #######                               
5IVW_V       308 IDLKPTAv------LRPYQEKSLRKMFgn--grARSGVIVLPCGAGKSLVGVTAACTVRkRCLVLGNSaVSVEQWKAQFK 379  human
ABC20218     175 FSLRERTlngetfsLRPYQAEAARVFYaggssrGGSGVIVLPCGAGKTVVGIAAMALCQcYTLILVTSvTAARQWLAEIR 254  Moorella therm...
WP_003404428 168 LHQEGWQ-------LRDYQRLAADSFWa-----GGSGVVVLPCGAGKTLVGAAAMAKAGaTTLILVTNiVAARQWKRELV 235  Mycobacterium ...
BAB76402     175 IKLREETrtgkkflLRDYQRQAAEAFYqsgrvqGGSGVIVLPCGAGKTIVGMSAIAAVQeNTLILSTSlTSVRQWRRELL 254  Nostoc sp. PCC...
EGC77766     207 ISLKEKTssgtefeIRDYQRDAASSFVgdksagTGFGTIVLPCGSGKTIVGMLTMSLLKtSTLILTPNvAAVYQWRRELL 286  Treponema dent...
EGG07759     376 IDLKPATq------IRPYQEKSLSKMFgn--grARSGIIVLPCGAGKTLVGITAASTIRkSVLCLCTSgVSVMQWRQQFL 447  Melampsora lar...
CAZ80573     327 MDLKPQAq------IRSYQEKSLSKMFgn--grAKSGIIVLPCGAGKTLVGITAACTIKkSVVVLATSsMSVVQWRQEFI 398  Tuber melanosp...
CBZ53904     448 LLLKSSTk------IRYYQERALRKMFsn--grARSGIIVLPCGAGKTLTGITAACTLRkSVMVLTTSaVAVDQWRKQFE 519  Neospora canin...
AAK39664     206 IELKSNVi------VRKYQEKALSKMFnk--grARSGVIVLPCGSGKTIVGISATSIIKkTTLVVCNSsVSVDQWRRQYI 277  Guillardia theta
CBK24509     272 IRLAPSTh------IRPYQERCLNKMFgn--grARSGLIVLPCGAGKTIVGITAAVTIKkSCIVVCNStLSALQWRDSFL 343  Blastocystis h...
Feature 1                                                                                        
5IVW_V       380 MWstiddsQICRFTSDAKDkpi---gcSVAISTYsml---ghtTKRSWEAERvmewlktqeWGLMILDEVHTIPAKMFRR 453  human
ABC20218     255 DKtdlppeMLGEYTGEKKEi------kPVTVATYqiithrrrrNEDYPNFQLfnq----qdWGLIIYDEVHLLPAPIFRI 324  Moorella therm...
WP_003404428 236 ARtsltenEIGEFSGERKEi------rPVTISTYqmit--rrtKGEYRHLELfds----rdWGLIIYDEVHLLPAPVFRM 303  Mycobacterium ...
BAB76402     255 DKtdlpeeAIAEYSGEVKNt------gPITLSTYqiltyrpnrEDDFPHFDLfsa----rsWGLIIYDEVHLLPAPVFRI 324  Nostoc sp. PCC...
EGC77766     287 DKtnikdeDIGLYTGEVKEi------rPVTIATYqvltwrpntDAAFPHFKIfre----raWGLIIYDEVHLLPAPVFRI 356  Treponema dent...
EGG07759     448 MWsniqdrQISVFTAETKEkfa--gasGIVVSTYsmv---anrTKRSHDSQKmmdfltsreWGLILLDEVHVVPAAMFRR 522  Melampsora lar...
CAZ80573     399 KWtninpdAIAIFTSENKEkfr--gdaGIIVSTYsmv---tnsRNRSHDSQKmmdflqsreWGLLILDEVHVVPAQIFRK 473  Tuber melanosp...
CBZ53904     520 EYttidssRLLTLTAETKQtlwpvdeaGVLVSTYtml---afsGRRSLAAERimqqirereWGLLIFDEVQFAPAPAFRR 596  Neospora canin...
AAK39664     278 KWtsisstRIKNFVSGEFAflds-ivaEIVVTTYsmi---sfgGQRAKLSASllreikereWGMVILDEVHVVPANIFRK 353  Guillardia theta
CBK24509     344 SFcdvkgdCIRILVKDKRDplp---npCILLTTYyql---ikrRKINKEREAilneiasreWGLLVLDEVHVCPADSFQE 417  Blastocystis h...
Feature 1                               
5IVW_V       454 VLTIvqaHCKLGLTATLVREDDK 476  human
ABC20218     325 TAELq-aRRRLGLTATLIREDGH 346  Moorella thermoacetica ATCC 39073
WP_003404428 304 TADLq-sKRRLGLTATLIREDGR 325  Mycobacterium tuberculosis complex
BAB76402     325 TAELq-aRRRLGLTATLIREDGR 346  Nostoc sp. PCC 7120
EGC77766     357 TAELq-vIRRLGLTATLVREDGC 378  Treponema denticola F0402
EGG07759     523 VVGTikaHAKLGLTATLVREDDK 545  Melampsora larici-populina 98AG31
CAZ80573     474 VVHSiatHSKLGLTATLLREDDK 496  Tuber melanosporum
CBZ53904     597 INDLvksHCRLGLTATLVREDDL 619  Neospora caninum Liverpool
AAK39664     354 VLGLlktNCKLGLTATLLREDRK 376  Guillardia theta
CBK24509     418 VVSTvkaHCKLGLTATLVREDGK 440  Blastocystis hominis

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