Conserved Protein Domain Family
DEADc_DDX31

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cd17949: DEADc_DDX31 
DEAD-box helicase domain of DEAD box protein 31
DDX31 (also called helicain or G2 helicase) plays a role in ribosome biogenesis and TP53/p53 regulation through its interaction with NPM1. DDX31 is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350707
Aligned: 22 rows
Threshold Bit Score: 296.42
Created: 30-Jan-2014
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
ATP bindingDEAD box
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:based on structures of other members of the DEAD-box helicase family with bound ADP/AMP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                     ## ###  #                      ########                             
Q9H8H2        241 LISTINtv---lKMSSMTsVQKQSIPVLLE-----GRDALVRSQTGSGKTLAYCIPVVQSLqame----------skiqR 302  human
BAJ77376       42 LVSQLNs----lGYEKMTkVQELVIPKILN-----GGDILFRAPTGTGKTLSFLVPAIQRSllndig-------rttfrR 105  Cryptosporidi...
AAZ10099      143 LIRPLTev---lCINSLTrIQKLSWMPMVDk----TRDVLVRSETGSGKTLAYALPLLHQLlcdcd--------trplkR 207  Trypanosoma b...
XP_003334383  151 ISKHLStnskvgPVKSPTaIQSIAWPLLCAqsntsTRDVIVQSETGSGKTLAYLVPIIQDLltltknh-----peiswsR 225  Puccinia gram...
CBN79743      575 PKGNLGgg--gmGLAGPTvCQLAAVPVLAA-----GNNTVIKSETGSGKTLAYLLPMLCDLasve----------prvdR 637  Ectocarpus si...
Q6C835        244 LVDALVg----mQLAKPTkIQRATIPRLIQr----ERDLFVQAQTGSGKTLAFVLPVLERImscd-----------dvsR 304  Yarrowia lipo...
O60173        149 LADHLNnk---mNISAPTaIQSCCLPALLNt---dDKDAFIEAQTGSGKTLAYLLPIVQRLirlpk---------nlhtR 213  Schizosacchar...
EGF83857       21 LSLHLSkk---fEFEKPTlIQKASIPVLLDp---tHNDAIIQAQTGSGKTLAFLLPILHSLirsaarqsthpttqhmfsR 94   Batrachochytr...
Q7S873        156 VSQHLAtk---lEMKAPTaIQKNTIPQLVKe----DSDAFLQAETGSGKTLAYLLPIVHRIlalshnedg-tpkttkvhR 227  Neurospora cr...
P36120        154 LVSHLEqk---mRIKKPTsIQKQAIPQIIGna--gKNDFFIHAQTGSGKTLSYLLPIISTIlnmd----------thvdR 218  Saccharomyces...
Feature 1                                                                                         
Q9H8H2        303 SDGPYALVLVPTRELALQSFDTVQKLlkp----------------------------------ftWIVPGVLMGGEKRKS 348  human
BAJ77376      106 SDGTIILILTPTRELCIQTIETARLIvqk----------------------------------msWCVTGCICGGEKRKS 151  Cryptosporidi...
AAZ10099      208 DVGSVIIVLCPVRELVVQVSDVLTILtrc----------------------------------alFLTVGGIHGGENRHK 253  Trypanosoma b...
XP_003334383  226 EIGTLAIILVPTRELAEQVYHVAIDLlsfaqrsgtsskevegeetppqdeksveretaadglnprWLVPGTLHGGTNRTH 305  Puccinia gram...
CBN79743      638 EKGTLAIVLAPTRELGSQILEVLTRVvrp----------------------------------fiWLVPGSLSGGERRKS 683  Ectocarpus si...
Q6C835        305 ETGLFAVILTPTRELTTQIYSVLETLcrk---------------------------------acpWIVPGIVIGGEKKKS 351  Yarrowia lipo...
O60173        214 TSGIYAVIMAPTRELCQQIYNVANKLnnnp--------------------------------lshWIVSCNVIGGEKKKS 261  Schizosacchar...
EGF83857       95 TAGTFAIILAPTRELAHQISEVLDSLlkyslq----------------------------mhyrhWIVSSIVVGGEKRKS 146  Batrachochytr...
Q7S873        228 NSGLFAIILAPTRELCKQIAVVLEKVlrc----------------------------------apWLVCTTVIGGESKKS 273  Neurospora cr...
P36120        219 TSGAFALVIAPTRELASQIYHVCSTLvsc----------------------------------chYLVPCLLIGGERKKS 264  Saccharomyces...
Feature 1                                                                                         
Q9H8H2        349 EKARLRKGINILISTPGRLVDHIKStk------------------------niHFSRLRWLVFDEADRILdLGFEKDITV 404  human
BAJ77376      152 EKARLRKGITILGGTPGRILDHIDStn------------------------cfKVTNLKTLIVDEADRLLeEGFGASYKK 207  Cryptosporidi...
AAZ10099      254 EKARLRKGITILATTPGRLLDHLKAts------------------------sfRVEELQTIVLDEADRLLdMGFEKTIRE 309  Trypanosoma b...
XP_003334383  306 EKARLRRGLPLLVCTPGRLLDHLEKtvslrmagepippsndpnakakvdprsiGHLNLRWLVVDEADRLMdMGFEEQMRG 385  Puccinia gram...
CBN79743      684 EKARLRKGVTVLVCTPGRLLDHLKTtk------------------------cfRRDSLRWLILDEADRLLdMGFEKQVKE 739  Ectocarpus si...
Q6C835        352 EKARIRKGVNILVATPGRLADHFDNte------------------------alDLSQVRWVVLDEGDRLMeLGFEETITK 407  Yarrowia lipo...
O60173        262 EKARIRKGVNILIGTPGRLADHLENte------------------------alDVSQVRWVVLDEGDRLMdMGFEETLTK 317  Schizosacchar...
EGF83857      147 EKARLRKGVNILVCTPGRLLDHLRTtd------------------------sfDVSNLRWLILDEADNLLhLGFEETLRD 202  Batrachochytr...
Q7S873        274 EKARIRKGVNILIATPGRLTDHLDNtk------------------------vlDVGTVRWLVLDEGDRMMeMGFEDDIKT 329  Neurospora cr...
P36120        265 EKARLRKGCNFIIGTPGRVLDHLQNtkvi---------------------keqLSQSLRYIVLDEGDKLMeLGFDETISE 323  Saccharomyces...
Feature 1                                                                                   
Q9H8H2        405 ILNAVNae---------------------------------cqKRQNVLLSATLTEGVTRLADISLh-DPVSIS 444  human
BAJ77376      208 IYQFVInqnanlsshgiyngdddeelsmllnvkvnkekkldkvNRQIILVSATLSKPVEDLARYSLknDPEWLV 281  Cryptosporidium parvum
AAZ10099      310 VMDLLVakkrdahq---------------------tgggdaqsSFKRVLVSATITAAVERLSHFALr-DNIVRV 361  Trypanosoma brucei ...
XP_003334383  386 ILKHLTdreaktnnpnk---------------vplsssssssnARRTILCSATMPDGVKKLVGLSLn-DPILLR 443  Puccinia graminis f...
CBN79743      740 IVELLDqsaravrsgpaggs---------rvqggavvpstkviRRQTVMVSATLDKGVSRLSAALLs-KHIRVD 803  Ectocarpus siliculosus
Q6C835        408 ILRTIEwksvlrgenylk--------------dipknlkplpsRRVTVLCSATMKGGVTELGKSTLk-DADWVS 466  Yarrowia lipolytica...
O60173        318 ILSYLEsqssiik-----------------------kdlsipsRKVTMLCSATMKDTVKRLSDSALk-DALYLK 367  Schizosaccharomyces...
EGF83857      203 ILKILDtkrdvglynq-----------------trvhvpgwprGRQTVLCSATIEAGVKRLAEYALv-KPNFIR 258  Batrachochytrium de...
Q7S873        330 IVGKIRagtlqkknae-----------------gvvldgvlpsRRVTVLCSATMKMNVQKLGEISLe-DAVHIT 385  Neurospora crassa O...
P36120        324 IIKIVHdipinse-----------------------kfpklphKLVHMLCSATLTDGVNRLRNVALk-DYKLIS 373  Saccharomyces cerev...

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