Conserved Protein Domain Family
RUN_SGSM1_like

?
cd17687: RUN_SGSM1_like 
RUN domain found in small G protein signaling modulators, SGSM1, SGSM2, and similar proteins
SGSM1, also called RUN and TBC1 domain-containing protein 2 (RUTBC2), interacts with numerous Rab family members, functioning as Rab effector for some, and as GTPase activator for others. It is a Rab9A effector and GTPase-activating protein for Rab36, and links Rab9A function to Rab36 function in the endosomal system. SGSM2, also called RUN and TBC1 domain-containing protein 1 (RUTBC1), is a GTPase-activating protein for Rab32/38, and regulates melanogenic enzyme trafficking in melanocytes. It also acts as a Rab9A effector that activates GTP hydrolysis by Rab32 and Rab33B proteins. This model contains the RUN domain of SGSM1 and SGSM2.
Statistics
?
PSSM-Id: 439049
Aligned: 19 rows
Threshold Bit Score: 193.657
Created: 8-Mar-2016
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q2NKQ1         20 KEVKQIMEEAVTrkfvhedsshIISFCAAVEACVLHGLRrraagf-lrsnkIAALFMKVGKNFPpaeDLSRKVQDLEqli 98   human
XP_002611867   24 KEVKQIMEEAVTrkfvhedsghIIALCAAVEACLLHGLKkrtisf-lsgntAAALINKVGKDFQpaaDLAKKCQEIElen 102  Florida lancelet
CCD59223       23 LNVKTLMEYASVcrsipedsthVISFCTLVHECLRIGLKtspfsf-yqnisTYSLLHKISNQCEtslKIINKFENRFnei 101  Schistosoma m...
KFD69088       53 LNVKRIMEEAVCmkvigessgnITALCLAVENCLLHGLRkrvfgf-fgratTFTLLHKVAISFPpaaSVLRLTVEVErap 131  pig whipworm
XP_009861251   23 SQVKAIMEEAVTkkfvheesphVLRLCGTVETCFLDGLRkrtagf-lrsnkIASLFTKVGKGVPqvaELVTKIEEIEtnm 101  vase tunicate
XP_012554607   12 REAKKLIGEAVSkkfihtdsnlVTSLCGAVDCCITHKLKkrvgglfpptndSFDVLVKLSKLCStaaSVLRMATHMShih 91   Hydra vulgaris
KRY59287       14 KQVKHIVEEAVLkkvisesdscLLSLCLAVEHCLLHGLRkrvfgl-fgratTFALLHKIAVSFPpaeQIFRKAVSLEkls 92   Trichinella b...
NP_001255072   90 IEIKNIMAEHGAkkylnlnspyVTSLCIAVDACIMDGLRrrlltl-fnspsSMSLLQIIAKSNGpaqQVLDQTREIEelr 168  Caenorhabditi...
XP_020619083   47 KEVKQLMEEAVTrkfihadsssITSLCGAVEAGIAHGLKkraagl-lppqdTQSLLLKLARLSEpaaELIKKLSGEDers 125  Montastraea f...
XP_002738216   86 LGCQADYGRSGHpevchedsgcIRSLCASVDASLTQGLKkrvggl-lksytTASLFKQCAKQCTpalLVAQKLLKLKpkl 164  Saccoglossus ...
Q2NKQ1         99 esarnqiqglq---------------envrklpklpnlspLAIKHLWIRTALFEKvLDKIVHYLVENss--kYYEKEALL 161  human
XP_002611867  103 ekkrlanlgitni-----------gneilkrqnsftgsaqAQNKYLWSRMALYNKvLARIVEYLTENss--kYYESNALL 169  Florida lancelet
CCD59223      102 enshs---------------------------nnsekfnnNSSNIEWIHFALVEKlLETIVQHICSRak--eFYSSDSIM 152  Schistosoma m...
KFD69088      132 levkn---------------------------kdeldrlrTRRKLLWIRLALVEKvLDLIVDYIAKNap--rYYDPDALM 182  pig whipworm
XP_009861251  102 nkppsqd------------------------vslsqnnnaHNKKHLWIRIALISKiLDKIAEHLVDHsa--kYYESSSIM 155  vase tunicate
XP_012554607   92 qskgrfspeve---------------lnspekrrlngysgFCTKYLWIRLALLERlLTTIVGSLVEHan--eFYDPDALL 154  Hydra vulgaris
KRY59287       93 ltrk------------------------------rhqsvlVQHEITWIRLAITEKvLDIIIKYISENar--kYYDENALM 140  Trichinella b...
NP_001255072  169 -------------------------------------tsaIPVHLIWIREALYLKsLSTIINHFIDSksvrrYYDNSALL 211  Caenorhabditi...
XP_020619083  126 kdrsrnlspgpvespilkmkfnfsalnssnkklngynitgHCGKFLWIRIALLEKlLRKIVEDLQTNas--qFYEPEALL 203  Montastraea f...
XP_002738216  165 rmhtfgvifes---------------kngdssrpvmilspLVQKHLWIRTALFEKhLAKIIEHLVENns--kYYEKEALL 227  Saccoglossus ...
Q2NKQ1        162 MdpvDGPILASLLVGPCALEYTK 184  human
XP_002611867  170 AdpvEGTILASLLVGPCALDFSK 192  Florida lancelet
CCD59223      153 AnkcDVNVFLSLIRGPCAINYSS 175  Schistosoma mansoni
KFD69088      183 FdsvTGNMVAGLLVGPCALEYTK 205  pig whipworm
XP_009861251  156 AnplSGRLISAILVGPCALDFTK 178  vase tunicate
XP_012554607  155 SdpvNGPSLVWLLDGPCSLDFSR 177  Hydra vulgaris
KRY59287      141 RdsvSSSMVAGLLVGICALEYTQ 163  Trichinella britovi
NP_001255072  212 LdpvKGRLVATLMMAPCMVTYRR 234  Caenorhabditis elegans
XP_020619083  204 SdpaDGRIFIELLDGPCALDFSK 226  Montastraea faveolata
XP_002738216  228 AdpvDGPILSSLLVGPCALDYSK 250  Saccoglossus kowalevskii
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap