Conserved Protein Domain Family
A_NRPS_CmdD_like

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cd17652: A_NRPS_CmdD_like 
similar to adenylation domain of chondramide synthase cmdD
This family of the adenylation (A) domain of nonribosomal peptide synthases (NRPS) includes phosphinothricin tripeptide (PTT, phosphinothricylalanylalanine) synthetase, where PTT is a natural-product antibiotic and potent herbicide that is produced by Streptomyces hygroscopicus. This adenylation domain has been confirmed to directly activate beta-tyrosine, and fluorinated chondramides are produced through precursor-directed biosynthesis. Also included in this family is chondramide synthase D (also known as ATP-dependent phenylalanine adenylase or phenylalanine activase or tyrosine activase). Chondramides A-D are depsipeptide antitumor and antifungal antibiotics produced by C. crocatus, are a class of mixed peptide/polyketide depsipeptides comprised of three amino acids (alanine, N-methyltryptophan, plus the unusual amino acid beta-tyrosine or alpha-methoxy-beta-tyrosine) and a polyketide chain ([E]-7-hydroxy-2,4,6-trimethyloct-4-enoic acid).
Statistics
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PSSM-Id: 341307
Aligned: 22 rows
Threshold Bit Score: 601.935
Created: 3-Feb-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
AMP bindingacyl-activating
Feature 1:AMP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
Q9L9G0         35 PSSPAIVt----nGETLSYDEVNARANRLARLLLDEGagpgRLVALAlpRSSHLVISVLAVAKAGAVFLPLDVNHPrERL 110  Streptomyces ...
NP_356942     546 PQAAALImpqadaDDIMTYGELNARANRLARLLRRKGvsaeTVVAISlpRSFDMIVAWLAVWKAGGAYLPLDPEYPaERI 625  Agrobacterium...
AAU00074      518 PDHTAVEa----pDRQLTYRELDEAANRLAHHLLALGvrpeQPVGVAldGTADAIVATFAVLKAGAVLLPLDPEYPaERL 593  Streptomyces ...
AAX31559     1545 PGHIAVEvag-rrPATTTYDALNRRANRLARLLTDRGvrpeQRVAIAlpRSADLVTAWLGILKAGAVCVPVDPAYPdDRI 1623 Streptomyces ...
CAG29031     2026 PDAIAIEr----gDLKLSYGELDRRSTRLARHLATLGfgpeKRAALClpGSVEFIVSMLGVWKAGGAYVPVDPEYPeARI 2101 Stigmatella a...
AAZ23078     1544 PHATALEh----aGHHLTYAELNARANRLARVLVRRGirpeHRVAILmpRSVEQITALLAITKAGGAAVPVDPGHPgQRI 1619 Streptomyces ...
CAJ34367       16 GDHVAVIf----gDRLVSYAELDARANRLARVLVERGvgpdTTVAVAmpKCDELMVVLLAVLKAGGAYLPLDPQYPaKRL 91   Micromonospor...
ABN47116      520 PSAPALHf----gSEIQSYETVDTNANKIARALHEFGigpeMVVGLFmeKSPDWLISLLAVWKAGAAFLPLDPSYPsERV 595  Sinorhizobium...
Q70LM4        477 PDAVAVAy----kNRELTYAQLNERANQLAHRLIRKGvkpdTLVGICleRSPEMIIGILGVMKAGAAYVPIDPAHPqERI 552  Brevibacillus...
WP_012267923  547 PDAIALIf----kGEQLTYRELNSKANQLANYLQTLGvkpeTLVGICiePSLEMIVGILGILKAAGAYVPIDPTYPsERI 622  Microcystis a...
Feature 1                                                                              ##         
Q9L9G0        111 SYQLADarPALLCTVrsaaarlpdgiemprvlldspertavldalpdtdltdderggplaATDLAYVIYTSGSTGRPKGV 190  Streptomyces ...
NP_356942     626 GAMLSDagARLVVSHssidlpktanrlnlde-------------dfpddesadnletvthSSQLAYVIYTSGSTGKAKGV 692  Agrobacterium...
AAU00074      594 EHILRRsgATLLLTQrslagrfagndvttvllddd------atraaladgpadrpglpiaPDRLAYVIFTSGSTGVPKGV 667  Streptomyces ...
AAX31559     1624 AHMAADaaPALLIASaatrdrmlptgipvldlddp-----avtaalaaapdgnprgtgllPAHPAYVIYTSGSTGTPKGV 1698 Streptomyces ...
CAG29031     2102 EHMLEDssAELLLTVraagerprfqgrtlwmd------------eeipehahppelglpsASAAAYVIYTSGSTGKPKGA 2169 Stigmatella a...
AAZ23078     1620 AFMLRDsaCALILADhphaagreeiagvpvlvpad-----epaperatdladgdrnapltAGHAAYVVYTSGSTGRPKGV 1694 Streptomyces ...
CAJ34367       92 AYMVQDarPTLLVRMaqvslelgvpvaelvvddpdta--retesrpdhqltdasrnaplrPDNLMYVIYTSGSTGTPKGV 169  Micromonospor...
ABN47116      596 AFMLADanVGIILTQdslrdrlppfpgtiwclgh--------ewsriaelpsqplqtpvnPDSLAYIIYTSGSTGWPKGV 667  Sinorhizobium...
Q70LM4        553 AYMVADsqASALLTQqslleilpvtaahvicld----------sdlladepvdnassevtEQNLAYVIYTSGSTGLPKGV 622  Brevibacillus...
WP_012267923  623 AYMLDDsqLAVLLTEeklvtslpqhqaqviclds--------dwkeistesksypitsltPENLAYVIYTSGSTGKPKGV 694  Microcystis a...
Feature 1                                                                                         
Q9L9G0        191 ALTGAGLPALAAAKVAamrvtgdSRVLQFASpGFDAYLTELLAAFTaGATLVVPGtdtl-agdpLRRALRDgrVSHAVLP 269  Streptomyces ...
NP_356942     693 LVDHSGLINLTRDKIRacdvtadDCVLQFFSfSFDASIPELVMSLGaGARLLLLPryatlpgaeLADILRArhVTHLTMT 772  Agrobacterium...
AAU00074      668 MVPHRGIGSLTRSAEQfaq-tpdSRVLRFASpSFDVSLLELLMTFDaGATLVLEPrallvpgedLARLIRErrVSTVLLS 746  Streptomyces ...
AAX31559     1699 VVTHEGIPALAATQQEalragpgDRVLQLVStSFDASVWDLCSALLsGATLVLAPdadl-fgdeLAAALTAhrITHVTLP 1777 Streptomyces ...
CAG29031     2170 VLEHRGLANISAVSRErfalgadGAVLQFASpSFDASVWEITAALTsGARLVLPTdetsragegLAALLTQkrISLTLLP 2249 Stigmatella a...
AAZ23078     1695 VTEHRGLLSLATAQRErypvgpgSRVLQLASpSFDGAVLELLMALTtGGTLVLPDgpll-agqpLADMLAEhrISHAFIP 1773 Streptomyces ...
CAJ34367      170 AVTHTGVADIVAAQTAsiaprpgDRVLQWASvSFDAAFWDWSAALLsGATLIMAPadellpgqpLRDTLRRyaVTHAVLP 249  Micromonospor...
ABN47116      668 MVPHRCACNTMQTIVDalqlpvgARVLQFGSlSFDISIYDLLMTLGcGGTLCLAPtndllpgqpLADTLRElrINAVALP 747  Sinorhizobium...
Q70LM4        623 MIEHHSAINLAYALIDafdiqptSRVLQFTSfSFDVSVSEVVMALLaGATLVIEDresllpgpeLIQVLQEqrITTVSMV 702  Brevibacillus...
WP_012267923  695 LVAHRGLCNLSQAQIKlfnvqpdSCVLQFASiSFDASISEIVMALCaGARLYLGTreelqpgqpLLELLQEqeITHLTLV 774  Microcystis a...
Feature 1                               ##                  ######                      #         
Q9L9G0        270 PAAVATmspd-avpDLRVLVVAGEacPAGLVERWap-grLLINAYGPTECTv-cATMTGPltp--tdeVTIGRPIpgVSV 344  Streptomyces ...
NP_356942     773 PSALLSlpvd-dllSLRTVLVGGEvpMPELIERWgk-trRFINAYGPTETTv-nASMVDMggg--ragLPVLRPAanKQL 847  Agrobacterium...
AAU00074      747 PSALSTltag-elpGLRTVVMAGEaaTLELAQQWcd-grDVFNGYGPTEATv-lATIARCapd---rvPPLGRPVagYTV 820  Streptomyces ...
AAX31559     1778 PAALAAvpag-aapPRLTVTVTGDvcGPQLVDRWaggerRILNGYGPTEVTv-gATYAVCertgdgapVPIGAPWpdQRV 1855 Streptomyces ...
CAG29031     2250 PSTLAAlpeg-aypDLRVLISGGEacTAELVKKWavgsrRFFNAYGPTETTi-yATLAELtpdq-agaPPIGRPIpgSVV 2326 Stigmatella a...
AAZ23078     1774 PAVLSGlpse-gleGLRCLVVGGEavTAPLTDRWap-grRMLNIYGPTETTavtLTSEALtpg--gppPAIGTPVpnTRA 1849 Streptomyces ...
CAJ34367      250 PVALSVtepd-dvlVGGTLMSTGDacTRALVAKWap-grRMYNGYGPTETTv-gSTIAGPiai--sdeITIGTPWsgNRV 324  Micromonospor...
ABN47116      748 PSALNAipttddlpDLHTIMSGGEalAAELAQRWstptcRVINGYGPTEATi-wSTYYQCsgd--edvLPIGRAVsqTQA 824  Sinorhizobium...
Q70LM4        703 SSVLAAlpda-dlpDLHTLIVGGEapSRELVARYap-grQFFNCYGPTEATv-cSTMMLCqag--mnnPPIGRPIanATV 777  Brevibacillus...
WP_012267923  775 PSALAAlsse-nlpALQNIIVAGEpcPPSLVIQWan-grRFFNAYGPTESTv-cATVAQCfed--mnmLPIGRPIanTKI 849  Microcystis a...
Feature 1                                                                   #           #  #      
Q9L9G0        345 YILDaerrpaapgeiGELYLSGagLAQGYLNSPDLTAQMFVPNPFaa--dGERMYRTGDLASRRaDGDILFHGRIDDQVE 422  Streptomyces ...
NP_356942     848 YVLDdnlellpfgvpGELHIGGcgIARGYHDRAALTAERFVPDPFatdgrAGVLYRTGDRAVLLaDGRIHVSGRLDSQVK 927  Agrobacterium...
AAU00074      821 HVLDdtlrpvpfgrqGELFLGGvgLARGYLDQPDVTADRFLPDPSgt-epGARLYRTGDVVRWGaDGELEFLGRTDHQVK 899  Streptomyces ...
AAX31559     1856 YVLEhrlrpvpagcvGEIYVAGagLARGYLGRPGQTAERFVADPFga--pGERMYRTGDLARRRsDGHLLFEGRADTQVK 1933 Streptomyces ...
CAG29031     2327 RILDsaqrqvpigvpGELCIGGiaVGRGYHGLESLTRERFIQDTFss-npAARLYRSGDLARWRsDGSIDYLGRLDHQVK 2405 Stigmatella a...
AAZ23078     1850 HVLDdrlrpvppgvtGELYLAGasLARGYGRRPALTASRYVGCPFga--pGERMYRTGDLARLDrEGRVHHMGRTDEQIK 1927 Streptomyces ...
CAJ34367      325 YVLDerlrpvpngrdGELYLAGngLARGYLNRPGLTASRFVLDPFgp--pGGRMYRSGDRGHRRaDGQLVFASRGDDQVK 402  Micromonospor...
ABN47116      825 YVLDrsaeplpygfpGELYVGGagVTRGYMNRSGLTAEQYIPDPFsg-epGSRLYRTGDRASLQsDGNIRFLGRIDNQIK 903  Sinorhizobium...
Q70LM4        778 YVLDanlnpvpvgvpGELYIGGkgLARGYWNRPELTAESFIPHPFgt--aGERLYRTGDLVRYRqDGNLEFLGRIDHQVK 855  Brevibacillus...
WP_012267923  850 YILDrylqpvpigvpGELHLASvgLAKGYLNRPELTDSKFIANPFsq-klSDRLYKTGDLVRYVnDGQIEFIGRIDHQVK 928  Microcystis a...
Feature 1                                                                                         
Q9L9G0        423 LRGFRVELGEVESVLSQHPd-vAQAVAALWTdpaegPQLVTYVVPapg----ttPSAGELREHAGRFLPDFMVPSAFTTI 497  Streptomyces ...
NP_356942     928 IRGYRIEPGEIEARLLAHPa-iVSATVAVRDdgrggKRLAAYAVPqidqdaatrPTPSEIRAWLANRLPKFLVPDTFDWL 1006 Agrobacterium...
AAU00074      900 LRGFRIELGEIETRLEDHPg-vRTAVVLVRGeg-sdRRLAGYAVRapg---eerPTAAGLRQWLRDRLPGYMVPELFLVL 974  Streptomyces ...
AAX31559     1934 IRGFRVELAEIEAALASHPg-vEDAVVTVYDdglgdQRLVAYVTGgp-----gtPSAAALRAHLASRLPRHMVPGDVLTL 2007 Streptomyces ...
CAG29031     2406 LRGYRIELGEVEAAISSHPg-vQQALITVHK-----GQLAAYAVGrgg----aiPTVQALREHAKARLPAYMVPAHILLL 2475 Stigmatella a...
AAZ23078     1928 LRGFRVEPGEIRARLTEHPa-vREAAVVLRDdgpggRALVAYAVPadg---pprPTAAQLRAHLNALLPPYMVPAAFLVL 2003 Streptomyces ...
CAJ34367      403 IRGFRVELGEVEARLAAHPavdVAAVVVVGDla--gARLAAFVSTvag----tgVSAAELSAHSAETLPEHMVPSSVQVL 476  Micromonospor...
ABN47116      904 LNGYRIELQEIESALTRHPq-vTEAAVVVQRsrcgvSRLAAFCTVsgd----aaTIHKELLLYLRRHLPKYMVPEVFTIL 978  Sinorhizobium...
Q70LM4        856 IRGYRIELGEIENAIRQHPa-vQEAVVIAREekagdKRLAAYLVAagk----aqPPAEEIALFLKETLPEYMVPAGVVWL 930  Brevibacillus...
WP_012267923  929 IRGFRIELGEIETILNQHPq-vKEAIIIAREdqpgvKRLCAYVIAsq------nLTVSQLRLFLQEKLPQYMVPAFFVLL 1001 Microcystis a...
Feature 1                  #       
Q9L9G0        498 DaVPLTPGGKTDRAGLP 514  Streptomyces niveus
NP_356942    1007 EaLPLTMNGKIDPLKLP 1023 Agrobacterium tumefaciens str. C58
AAU00074      975 DaLPTSPNGKLDREALP 991  Streptomyces viridochromogenes
AAX31559     2008 DaLPLTANGKVDRTALP 2024 Streptomyces roseosporus NRRL 11379
CAG29031     2476 DaFPMTPNGKIDRKKLP 2492 Stigmatella aurantiaca
AAZ23078     2004 DaLPTTPNGKLDREALP 2020 Streptomyces fradiae
CAJ34367      477 QrLPVTANGKIDRAALR 493  Micromonospora sp. ML1
ABN47116      979 EeLPVNASGKLDRQKLS 995  Sinorhizobium meliloti
Q70LM4        931 DaIPLTVNGKVDRRALP 947  Brevibacillus parabrevis
WP_012267923 1002 DaFPLTPNGKIDRRALP 1018 Microcystis aeruginosa

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