5T3D,4ZXJ,5JA1,5JA2


Conserved Protein Domain Family
A_NRPS_AB3403-like

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cd17646: A_NRPS_AB3403-like 
Click on image for an interactive view with Cn3D
Peptide Synthetase
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions.
Statistics
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PSSM-Id: 341301
Aligned: 25 rows
Threshold Bit Score: 564.208
Created: 30-Jan-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
AMP bindingacyl-activating
Conserved site includes 26 residues -Click on image for an interactive view with Cn3D
Feature 1:AMP binding site [chemical binding site]
Evidence:
  • Structure:5T3D: Escherichia coli enterobactin synthase component F (enfF) binds Ser-vinylsulfonamide inhibitor, contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
5T3D_A        460 SALVAEQAAk---tPDAPALAd------aRYLFSYREMREQVVALANLLRERGvkpgDSVAVALpRSVFLTLALHAIVEA 530  Escherichia c...
AAN85493      505 PERFAAQVDa---hPDTVAVVea-----dGGQLTYGQLDVLANRVAHLLTARGvgaeDRVGVLLpGGGALAAAVLGVLKS 576  Streptomyces ...
AAN85501      520 LDAFHAHAAa---tPDATAVVadvpppatGHRLTYRELDERAGRLAHLLRARGigpeDRVALLLpRGLDLLVCLLAVLKA 596  Streptomyces ...
AAP92491     1089 TGLLARQVAl---aPQRTALTwrea-tgtVATLSYAGFDERSSRVAHALREYGvganTPVALCLaRGADVLPAVYGVLKA 1164 Streptomyces ...
AAT09804       18 GGLWRSIAAvlaggGARAAVVr------gARSLSFAELDARTSALAGRLRAAGvgaeRPVAVLAeDGVDQVVACLAVFRA 91   Nocardia unif...
AAT09805       37 HELVRRQAAe---hGARGAVTf------eGATTTYAELDAAAAGLARRLAGAGvrpgDVVAIALpPSERRIAAVLGALRA 107  Nocardia unif...
ABR67744      364 HDLVAEQARr---tPDRTALVf------aGAEVGYAELDARANRLAHELRERGvrreTPVAVCLeRETGLVVALLAVLKA 434  Saccharothrix...
NP_216896     442 VDLVNEQTTr---tPDATAVVy------eGQHFTYHDLNEASNRLGHWLIEQGigseDRVAVLLdKSPDLIVTALGVVKS 512  Mycobacterium...
YP_003768369   15 HRWVEQRAAe---tPDAVAVLadt--dltSVSLTYRELDESANRIAHWLRARGvgaeDRVGVHLdRGLDLVAVLLGIFKA 89   Amycolatopsis...
YP_003768379  508 HALVEAQADr---tPDAVAVAg-------ARPLTYRELDDRANRLAATLAGQGvrreDRVGVHLhRGPDLLVALLGVLKS 577  Amycolatopsis...
Feature 1                                                                                         
5T3D_A        531 GAAWLPLDTGYPdDRLKMMLEDa-rPSLLITTddqlprfsdvpnltslc------------------ynapltpqgsapl 591  Escherichia c...
AAN85493      577 AAVVLPLDPGYPpARLAQLVEDg-aPRLVLSGagstdllpdldvvdvtg------------------eevaghpghrppa 637  Streptomyces ...
AAN85501      597 GAVLVPLESEHPaGRLAGIVADa-tPCLTLTDtrlaarlpegtpvltved----------------lpaltahhpatgpd 659  Streptomyces ...
AAP92491     1165 GGGYVPIEPDNPpERIAGLVRDs-gARVLLTQrrqtaslpklpgvtvlvvd---------------dhealsrfpatvpk 1228 Streptomyces ...
AAT09804       92 GGVYLPVDPAWPaGRRAAVLADagpAAVVVGGaldggvagagalhagapgagstdavlaaeapvlpvhvgddegaegvpw 171  Nocardia unif...
AAT09805      108 GAAYLPLDPELPaPRLEFLLADa-gAAVLITDtatregpvaahdgptvlcdr------------lspdgaptaeptaepa 174  Nocardia unif...
ABR67744      435 GGAFVPLDPQYPrQRLAHMLADs-gAAVVLTQgrlrdrfaadgppvlvtdd---------------datrfahhpssapp 498  Saccharothrix...
NP_216896     513 GAVYVPVDPSYPqDRLDFILADc-dAKLVLRTpvrelagyrsdd-----------------------------ptdadri 562  Mycobacterium...
YP_003768369   90 GAVYVPLDPHLPaARLAHVLADs-aPSVTLTEgdlpgalpvetvrae-----------------------wasfpatrpe 145  Amycolatopsis...
YP_003768379  578 GAVYLPLDPDQPaERLDLILRDa-dPSVVVTSpalagapavtgratvlv-------------------tetagaraarpg 637  Amycolatopsis...
Feature 1                                                                   ###                   
5T3D_A        592 qlsqPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNhypltgeDVVAQKTPc-sFDVSVWEFFWPFIaGAKLVMAE 670  Escherichia c...
AAN85493      638 vataPDAGAHLLFTSGTSGRPKGVLTTRAGLVNRLMGMERqfsvgagDRVLCKAPl-gFDVAVWELLLPLVtGATVVSCR 716  Streptomyces ...
AAN85501      660 vpelPASGAYVLYTSGSTGAPKGVLITRAGLASRLAGMCAdlglgadERVLHKTPl-sADTSMWELLVALRsGGRVVLAA 738  Streptomyces ...
AAP92491     1229 pvprPQDLAYVIYTSGSTGRPKGVMVEHHSVVNYLTTLQEkfrltsdDRLLLKSPl-sFDVSVREVFWALStGATLVVAE 1307 Streptomyces ...
AAT09804      172 pepeRDQAAYLVYTSGSTGRPKGVLVTHGALANRMLWWQGehp-lgpDDVLMATAspaFDIAVWELLAAFVgGARLVIAE 250  Nocardia unif...
AAT09805      175 efpgSALAAYVIYTSGSTGRPKGVAVDHRSLVNRLLWMRErygvgqgDVVLHKTSf-gFDVSVWEQLLPLIsGARLVIAP 253  Nocardia unif...
ABR67744      499 assgPDDLAYVVYTSGSTGRPKGVMVEHRGIASYLRGMQHdfpltpeDRVLQATSl-sFDVSVYEIFWPLQvGAAVVLPA 577  Saccharothrix...
NP_216896     563 rplrPDNTAYLIYTSGTTGLPKGVAVPHRPVAEYFVWFKGeydvddtDRLLQVASp-sFDVSIAEIFGTLAcGARMVIPR 641  Mycobacterium...
YP_003768369  146 vpylGATAAYVVYTSGSTGTPKGVVVPYEALATQLGWLCArfgfgpaDVVLHKTPl-aSDPSLWELLVPVMsGGRLVLAE 224  Amycolatopsis...
YP_003768379  638 vpvdPANAACLLYTSGSTGTPKGTLLTHHGVANRMGQMVTghgfgpgDVVLQKTPi-gSDPSLWEMLVPVCaGGRVVFAE 716  Amycolatopsis...
Feature 1             #                   #                            ####                   ####
5T3D_A        671 PeaHRDPLAMQQFFAEygVTTTHFVPSMLAAFvasltpqtarqscaTLKQVFCSGEALPADLCREWQql-tgAPLHNLYG 749  Escherichia c...
AAN85493      717 VggHRDLEYLRELIDRhgVSVCHFVPSLLEEFanapa-----gahpSLRLLLSGGEELPAPLAERILdrfghAEFVNQYG 791  Streptomyces ...
AAN85501      739 PglGTDVDYLYSVLTRhaVTTCFFVPSALRPAiglgg----lpraaALRLVISAGEELPADLADQLLlqvphIRLVNSYG 814  Streptomyces ...
AAP92491     1308 AgrHADPDYLVEAIERerVTVVHFVPSMLHVLletldg---pgrcpTLRQVMTSGETLPVQTARRCLel-lgAELRNMYG 1383 Streptomyces ...
AAT09804      251 HrlRGVVPHLPELMTDhrVTVAHFVPSVLEELlgwma----dggrvGLRLVVCGGEAVPPSQRDRLLal-sgARMVHAYG 325  Nocardia unif...
AAT09805      254 QetRRDATALVRLVRAesVTVLHFVPSLLPAFldvae----veqarALRVAISSGEALPKPVAVDFArrlphCALHNLYG 329  Nocardia unif...
ABR67744      578 PggHTDPYHLSELIQRhgVTCLHFVPSLMRLFveead----pgagaGLRRVFVSGEALDPSLVALVHer-tsAELVNLYG 652  Saccharothrix...
NP_216896     642 PggLTDIGYLTALLRDegITAMHFVPSLLGLFlslpg----vsqwrTLQRVPIGGEPLPGEVADKFHat-fdALLHNFYG 716  Mycobacterium...
YP_003768369  225 PlnHGDPAYLLDVHDHygVTACDFFPSLLRHFlaepra---aeraaALRTVICGGEELNAELATRFAavlpgATLYNLYG 301  Amycolatopsis...
YP_003768379  717 PgrHTDAGHLLALLREhrVTACDFVPSMLVTAlaeprf---aesaaSLRFVVCGGEELPAPAAERFLelapgAVLTNYYG 793  Amycolatopsis...
Feature 1         ##   ##                    #                                                    
5T3D_A        750 PTEAAVDVSWYPAfgeelaqvrgssVPIGYPVwnTGLRILDAmmhpvppGVAGDLYLTGiqLAQGYLGRPDLTASRFIAD 829  Escherichia c...
AAN85493      792 PTETVIDVTSGRVsgpv-----phrVPIGRPVpgAEVYVLDAsmrpqpvGVVGELYVGGvqVARGYVGRAALTAERFVPH 866  Streptomyces ...
AAN85501      815 PTETTINIAEHTVtapa-----aspVPIGRPVpgGDLYVLDGagrvqpvGVPGELHAGGvqVARGYLGRPAQTAEVYVPH 889  Streptomyces ...
AAP92491     1384 PTETTVEMTDCEVrgrt----dterLPIGRPFpnTRVYVLDDelrlvprGTVGELYVSGapVARGYLGRPALTADRFLPD 1459 Streptomyces ...
AAT09804      326 PTETTITVVHDECradd----papgLPLGRPMhnAAVAVVDAdgrrapvGVAGELVVGGvpLARGYLGRPGETAARFVPD 401  Nocardia unif...
AAT09805      330 PTEATIDVTHWPVdgdd----erpfVPIGTPIdnTSVYVLDDhleplpvGAEGELCIGGqaVALGYLGRPALTAEKFAPD 405  Nocardia unif...
ABR67744      653 ATEVSVDSTYWTAdrak----pdrpVLVGRPManATAYVLDQrlrpkpaGVVGEVFLGGasVTRGYHARPALTAERFVPD 728  Saccharothrix...
NP_216896     717 PTETVINASRFKVvgpq----gtriVPIGRPKinTTMHLLDDslqpvptGVIGEIYIGGthVAYGYHRRAGLTAERFVAD 792  Mycobacterium...
YP_003768369  302 PTEATIAVTLHQVaaag----vtdpIPIGSPIpgTEILVLDPagapcpaGVTGELVIAGgqLARGYQGRPAQTAERFVPH 377  Amycolatopsis...
YP_003768379  794 PTEVSFDATAAAVtrpv-----ptpVPIGRPLagVEAYVLDTggeptpaGVPGELFLGGvqLTRGYLNRPGHTAETLVPH 868  Amycolatopsis...
Feature 1                        #           #  #     # ####                                      
5T3D_A        830 Pfa---pGERMYRTGDVARWLdnGAVEYLGRSDDQLKIRGQRIELGEIDRVMQALPdveqAVTHACVINQAaatggdaRQ 906  Escherichia c...
AAN85493      867 Pfa---hGQRLYATGDRARLLagGSVEFLGRTDDQVKIRGNRVEPAEVAAVLRAHP----QVSGSHVTVQRtg---aaPR 936  Streptomyces ...
AAN85501      890 Pfv---pGARVYRTGDRARWRpdGTLEFLGRTDHQVKIRGFRVEPAEVETALRAHP----QVADALVLADAapd--ggAR 960  Streptomyces ...
AAP92491     1460 Pyg--ppGSRMYRTGDLGRFTgeGLLDFQGRGDFQVQLRGHRIEPGEIETVLCEQP----GVTAAVAVVRRpds-peaAH 1532 Streptomyces ...
AAT09804      402 WlglgpaGGRVYRTGDRARRLpdGRIEFLGRVDDEFKVRGHRVDPAEIESLLHQHP----LVGRAAVRLADg------AH 471  Nocardia unif...
AAT09805      406 Pfg--apGARMYRTGDRARFGpdGAIEYLGRRDGQVKLRGYRVELGETEAALLESD----LVRQAAVVVRGeg---gaKR 476  Nocardia unif...
ABR67744      729 Pfg--ppGSRLYRTGDLGRVTpdGELEFLGRRDHQFKLRGWRVEAGEIEAAITAHP----GVNGAVVVTEGah---ehAT 799  Saccharothrix...
NP_216896     793 Pfn---pGSRMYRSGDLARRNadGDIEFVGRADEQVKIRGFRIELGDVAAAIAVDP----TVGQAVVVVSDlpr--lgKS 863  Mycobacterium...
YP_003768369  378 Pgr---aGERLYRTGDRARWRpdGALEFLGRLDHQVKIRGHRVEPAEVEAALTACP----EVAQAVVLAQAapg--ggPR 448  Amycolatopsis...
YP_003768379  869 Pfr---aGDRLYRTGDRVRRRpgGELDFLGRLDSQVKIRGYRVEPGEVESALRTHP----DVEHVAVRVFTde---agPR 938  Amycolatopsis...
Feature 1                                                                     
5T3D_A        907 LVGYLVSqsg------lplDTSALQAQLREtLPPHMVPVVLLQLPqLPLSANGKLDRKAL 960  Escherichia coli K-12
AAN85493      937 LTGYVTSdaan-----adeLTEELREFLRErVPEAMVPAQLFVLRqWPTGAHGKIDVTAL 991  Streptomyces atroolivaceus
AAN85501      961 LIGYVTVapgq-----sapDTPALRTHLRAaLPSPMVPDVFVALDaFPLTPYGKIDRASL 1015 Streptomyces atroolivaceus
AAP92491     1533 LVAYAVRaee------phgTDQALRAKLAErLPHYMVPTAVVTMDaLPLTVNGKLDRAAL 1586 Streptomyces vinaceus
AAT09804      472 VVAYLQGs----------aDPAELRAHLADrLPLAVIPTRWVRLDrFPLTPNGKVDYAAL 521  Nocardia uniformis subsp. tsuyama...
AAT09805      477 LVGFVSGrpdaa--ggaegAEAHVLARLSAtLPAYQVPSQLVWLDaLPLTPSGKVDRAAL 534  Nocardia uniformis subsp. tsuyama...
ABR67744      800 LLAYVGAda--------glDQAALREFLARrLPRPLVPARFIRLDrLPISPNGKVDRAAL 851  Saccharothrix mutabilis subsp. ca...
NP_216896     864 LVGYVTPaaggdgpadvgvDLDRIRARVAAaLPEYMLPAAYVVLDeIPITAHGKIDRAAL 923  Mycobacterium bovis AF2122/97
YP_003768369  449 LVAYLTRsaag-----pelPAAALRRALAGqLPPAMIPAVFVWLDrFPLTAVGKIDRAAL 503  Amycolatopsis mediterranei
YP_003768379  939 LAGYLTLraga-----tppDTGALRRHLATrLPAPMIPAAFVVLDeLPLLSNGKVDRSRL 993  Amycolatopsis mediterranei

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