5ES6,5ES5


Conserved Protein Domain Family
A_NRPS_LgrA-like

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cd17645: A_NRPS_LgrA-like 
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adenylation (A) domain of linear gramicidin synthetase (LgrA) and similar proteins
This family of the adenylation (A) domain of nonribosomal peptide synthases (NRPS) includes linear gramicidin synthetase (LgrA) in Brevibacillus brevis. LgrA has a formylation domain fused to the N-terminal end that formylates its substrate for linear gramicidin synthesis to proceed. This formyl group is essential for the clinically important antibacterial activity of gramicidin by enabling head-to-head gramicidin dimers to make a beta-helical pore in gram-positive bacterial membranes, allowing free passage of monovalent cations, destroying the ion gradient and killing bacteria. This family also includes bacitracin synthetase 1 (known as ATP-dependent cysteine adenylase or BA1); it activates cysteine, incorporates two D-amino acids, releases and cyclizes the mature bacitracin, an antibiotic that is a mixture of related cyclic peptides that disrupt gram positive bacteria by interfering with cell wall and peptidoglycan synthesis. Also included is surfactin synthetase which activates and polymerizes the amino acids Leu, Glu, Asp, and Val to form the antibiotic surfactin.
Statistics
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PSSM-Id: 341300
Aligned: 4 rows
Threshold Bit Score: 811.785
Created: 30-Jan-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
AMP bindingacyl-activating
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:AMP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
5ES6_A     206 HQLFEQQVEmtPDHVAVVDRGQSLTYKQLNERANQLAHHLRGKGvkpDDQVAIMldKSLDMIVSILAVMKAGGAYVPIDP 285  Brevibacillus pa...
5ES5_A     206 HQLFEQQVEmtPDHVAVVDRGQSLTYKQLNERANQLAHHLRGKGvkpDDQVAIMldKSLDMIVSILAVMKAGGAYVPIDP 285  Brevibacillus pa...
Q04747    2544 HQLFEETVQrhKDRPAVTYNGQSWTYGELNAKANRLARILMDCGispDDRVGVLtkPSLEMSAAVLGVLKAGAAFVPIDP 2623 Bacillus subtilis
O68006    2128 HQLFEEQAKriPDHTAVVFEDQKLTYRQLNEKANQVARLLREKGvkpDTLVGIMmeRSSDMIAAILGVLKAGGAYLPIDP 2207 Bacillus licheni...
Feature 1                                                                             ##       
5ES6_A     286 DYPgERIAYMLADssAAILLTNalheekangacdiidvh------dpdsysentnnlphvnrPDDLVYVMYTSGSTGLAK 359  Brevibacillus pa...
5ES5_A     286 DYPgERIAYMLADssAAILLTNalheekangacdiidvh------dpdsysentnnlphvnrPDDLVYVMYTSGSTGLAK 359  Brevibacillus pa...
Q04747    2624 DYPdQRIEYILQDsgAKLLLKQegisvpdsytgdvilldgsrtilslpldendegnpetavtAENLAYMIYTSGTTGQPK 2703 Bacillus subtilis
O68006    2208 EYPpERMRYMAFDseVKVIISDvplaeeltaesielihmd-----deriagqdrsdidnvnqSGDLAYVIYTSGSTGKPK 2282 Bacillus licheni...
Feature 1                                                                                      
5ES6_A     360 GVMIEHHNLVNFCEWYRPyfgvtpaDKALVYSSfsFDGSALDIFTHLLaGAALHIVPserkydlDALNDYCNQegITISY 439  Brevibacillus pa...
5ES5_A     360 GVMIEHHNLVNFCEWYRPyfgvtpaDKALVYSSfsFDGSALDIFTHLLaGAALHIVPserkydlDALNDYCNQegITISY 439  Brevibacillus pa...
Q04747    2704 GVMVEHHALVNLCFWHHDafsmtaeDRSAKYAGfgFDASIWEMFPTWTiGAELHVIDeairldiVRLNDYFETngVTITF 2783 Bacillus subtilis
O68006    2283 GVMIEHQSLINLCSWHQScfevgqnDNSSIYASisFDAFVWELFPYITaGATVHVLNqetrldvEKLNRYFHDhhITISF 2362 Bacillus licheni...
Feature 1                             ##              ######                   #               
5ES6_A     440 LPTGAAEQFMQmdnqSFRVVITGGDVLKKIERNgtYKLYNGYGPTECTimVTMFEVDKpyaNIPIGKPIdrTRILILDEa 519  Brevibacillus pa...
5ES5_A     440 LPTGAAEQFMQmdnqSFRVVITGGDVLKKIERNgtYKLYNGYGPTECTimVTMFEVDKpyaNIPIGKPIdrTRILILDEa 519  Brevibacillus pa...
Q04747    2784 LPTQLAEQFMElentSLRVLLTGGDKLKRAVKKp-YTLVNNYGPTENTvvATSAEIHPeegSLSIGRAIanTRVYILGEg 2862 Bacillus subtilis
O68006    2363 LPTPVCEQFTAldnhSLRTLLTGGDKLNVFKEKs-YQIVNNYGPTENTvvATSFPIDKshqNIPIGKPIdnVKVYILNKd 2441 Bacillus licheni...
Feature 1                                                       #           #  #               
5ES6_A     520 lalqpiGVAGELFIVGegLGRGYLNRPELTAEKFIVHpq-tGERMYRTGDRARFLpdGNIEFLGRLDNLVKIRGYRIEPG 598  Brevibacillus pa...
5ES5_A     520 lalqpiGVAGELFIVGegLGRGYLNRPELTAEKFIVHpq-tGERMYRTGDRARFLpdGNIEFLGRLDNLVKIRGYRIEPG 598  Brevibacillus pa...
Q04747    2863 nqvqpeGVAGELCVAGrgLARGYLNREDETAKRFVADpfvpGERMYRTGDLVKWVn-GGIEYIGRIDQQVKVRGYRIELS 2941 Bacillus subtilis
O68006    2442 lqlcplGASGELCIAGegLARGYVNRPELTREKFIGNpfvpGERMYRTGDLAKMLpdGNIQFLGRVDQQVKIRGYRIEPG 2521 Bacillus licheni...
Feature 1                                                                               #      
5ES6_A     599 EIEPFLMNHPliELTTVLAKEqadgrKYLVGYYVApeeiPHGELREWLGNdLPDYMIPTYFVHMKaFPLTANGKVDRRAL 678  Brevibacillus pa...
5ES5_A     599 EIEPFLMNHPliELTTVLAKEqadgrKYLVGYYVApeeiPHGELREWLGNdLPDYMIPTYFVHMKaFPLTANGKVDRRAL 678  Brevibacillus pa...
Q04747    2942 EIEVQLAQLSevQDAAVTAVKdkggnTAIAAYVTPet-aDIEALKSTLKEtLPDYMIPAFWVTLNeLPVTANGKVDRKAL 3020 Bacillus subtilis
O68006    2522 EIENRLLKYEkiEEAAVIAREdgdhdPYLCAYVTVkkevEPEKIRAFLKKsLPDYMIPQYFVQLDgLPLTVNGKVDKKSL 2601 Bacillus licheni...
Feature 1       
5ES6_A     679 P 679  Brevibacillus parabrevis
5ES5_A     679 P 679  Brevibacillus parabrevis
Q04747    3021 P 3021 Bacillus subtilis
O68006    2602 P 2602 Bacillus licheniformis

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