3VNQ,5APB,3VNR


Conserved Protein Domain Family
A_NRPS_Cytc1-like

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cd17643: A_NRPS_Cytc1-like 
Click on image for an interactive view with Cn3D
similar to adenylation domain of cytotrienin synthetase CytC1
This family of the adenylation (A) domain of nonribosomal peptide synthases (NRPS) includes Streptomyces sp. cytotrienin synthetase (CytC1), a relatively promiscuous adenylation enzyme that installs the aminoacyl moieties on the phosphopantetheinyl arm of the holo carrier protein CytC2. Also included are Streptomyces sp Thr1, involved in the biosynthesis of 4-chlorothreonine, Pseudomonas aeruginosa pyoverdine synthetase D (PvdD), involved in the biosynthesis of the siderophore pyoverdine and Pseudomonas syringae syringopeptin synthetase, where syringpeptin is a necrosis-inducing phytotoxin that functions as a virulence determinant in the plant-pathogen interaction. The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions.
Statistics
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PSSM-Id: 341298
Aligned: 16 rows
Threshold Bit Score: 551.529
Created: 26-Jan-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
AMP bindingacyl-activating
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:AMP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
3VNQ_A         49 PERTALSaeDDRISYGRLDAWSDAVARTLLAEGvr-pgDRVALRmspGAEAIVAILAILKCGAAYVPVDLRNPvSRSDFI 127  Streptomyces sp.
5APB_A         32 PDRTALHidDEKISYGLLHSWAEGLADLLHDAGvr-kgDRVALRmppGANAIAAMLGILRAGAAYVPLDIRNPpARNAFI 110  Streptomyces sp.
P39846       1514 PEHIAVVcgHSQLTYRDLNEKAERAAAMLIKQGvr-tgDIVGLMldrSPDMIIGVLSILKAGGAYLPIDPEYPkERISFM 1592 Bacillus subt...
AAK27469     1246 PGRPAVVceDRVLTYGELDRRADRLARRLRDEFgvgpgRIVGYTverTERVPVTQLAILKAGGAFLGIDPAHPeARRRAV 1325 Streptomyces ...
AAF99707      475 PDAAALVfeEQTLSYGELNARANQVAHRLLALGvr-pdDRVAICverGPAMIIGLLGILKSGAGYVPLDPAYPlERLAYT 553  Pseudomonas s...
ABL74939      524 PDAIAVShnGHHLTYRALQERADRVAAALRARGvg-pdTLVGLCvepGVDLVVGALGILRSGGAYLPLDPTDPvDRMRAV 602  Streptoallote...
P45745       1528 PDAIAVVyeNQELSYAELNERANRLARMMISEGvg-peQFVALAlprSLEMAVGLLAVLKAGAAYLPLDPDYPaDRIAFM 1606 Bacillus subt...
WP_012268172  485 PEAVAVVysDQQLTYNELNNRANHLAHYLQSLGvk-pdQLVGIClerSLEMIVGLLGILKAGGAYVPLDPEYPiERLSFM 563  Microcystis a...
NP_251089    1577 PQAVALIldEQRLSYGELNARANRLAHCLIARGvg-adVPVGLAlerSLDMLVGLLAILKAGGAYLPLDPAAPeERLAHI 1655 Pseudomonas a...
YP_003614437   26 PQRVAVKdlDHEISYGELRDWMLRIIQTLKDEGvh-agDKVAIElppGAELIASILAIQFIGAAYVPIDRNAPvARNILI 104  Proteobacteria
Feature 1                                                                           ##            
3VNQ_A        128 LADsgASALIGEphegcavtrvvrtaava-----------eckdaepgpvtgapgpgAEDMAYVIYTSGTTGNPKGVPVR 196  Streptomyces sp.
5APB_A        111 VTDsqVVALVGDpgdipeytgplvteenva----------alrdreaikdpgperpgPQDVAYIIYTSGTTGRPKGVPVR 180  Streptomyces sp.
P39846       1593 LNDsgAKLLLTErglnkpadytghilyid-----------ecennsipadvnieeivTDQPAYVIYTSGTTGQPKGVIVE 1661 Bacillus subt...
AAK27469     1326 LEDarPALLVVDghgrgllpegleglpvlald------evpdarddekadglppvcgADDPAYVIYTSGSTGTPKGVVVE 1399 Streptomyces ...
AAF99707      554 LGDsaPVALLSQqsvqpalpvsdvpliyld----------dvdlqderacnpqvsvrPSDLAYVIYTSGSTGLPKGVMVE 623  Pseudomonas s...
ABL74939      603 AGDagLRLVVTRgdvpappveridlgdlgdl--------ddagglgapahpglaqpvPANLAYVIYTSGSTGRPKGVAVS 674  Streptoallote...
P45745       1607 LKDaqPAFIMTNtkaanhippvenvpkivlddpelaeklntypagnpknkdrtqplsPLNTAYVIYTSGSTGVPKGVMIP 1686 Bacillus subt...
WP_012268172  564 LEDaqLSVLLTQqklgetlpqhqaqiiyldt--------dwekiaenshsnpentvtPDNLAYVIYTSGSTGKPKGVLVN 635  Microcystis a...
NP_251089    1656 LDDsgVRLLLTQghllerlprqagvevlai---------dglvldgyaesdplptlsADNLAYVIYTSGSTGKPKGTLLT 1726 Pseudomonas a...
YP_003614437  105 LNDsqPRMIINEsghsnfagfqaksiyq-------------mlsvsvmadsllnmavPEGLAYIIYTSGTTGNPKGVPIT 171  Proteobacteria
Feature 1                                                                                         
3VNQ_A        197 HANVLALLAGAPSvfdfsgdDRWLLFHSl-sFDFSVWEIWGAFStGAELVVLPhwaar-tpeqYLAVIIDrgVTVINQTP 274  Streptomyces sp.
5APB_A        181 HGNVTALFEACSRlfsfsadDRWLLFHSm-aFDFSVWEIWGALStGAELVVLPywtar-tpveTARVVRDrgITVLNQTP 258  Streptomyces sp.
P39846       1662 HRNVISLLKHQNLpfefnheDVWTLFHSy-cFDFSVWEMFGALLnGSTLVVVSketar-dpqaFRLLLKKerVTVLNQTP 1739 Bacillus subt...
AAK27469     1400 HANALALLWAGGWpfe-freDDVWTCTHsiaFDFSVWEIHLPLSrGARVVIVPeatrrdarrlLPALVRHg-VTVLSQVP 1477 Streptomyces ...
AAF99707      624 HRNVARLFSATQDwfgfneqDVWALFHSf-aFDFSVWEIWGALLhGGRLLIVPqlvsr-spedFYNLLCSagVTVLNQTP 701  Pseudomonas s...
ABL74939      675 HGNVTGLLAACRRalpvtdePQVWALTHsaaFDFSVWEMWGALTsGGRLVIVPpdvlr-kpdeLWELLRAerVAVLGQTP 753  Streptoallote...
P45745       1687 HQNVTRLFAATEHwfrfssgDIWTMFHSy-aFDFSVWEIWGPLLhGGRLVIVPhhvsrspeafLRLLVKEg-VTVLNQTP 1764 Bacillus subt...
WP_012268172  636 HSNVVRLFAATDAwynfnsqDVWSLFHSy-aFDFSVWEMWGALLyGGRLVVVPylitr-speaFYQLLCQekVTILNQTP 713  Microcystis a...
NP_251089    1727 HRNALRLFSATEAwfgfderDVWTLFHSy-aFDFSVWEIFGALLyGGRLVIVPqwvsr-spedFYRLLCRegVTVLNQTP 1804 Pseudomonas a...
YP_003614437  172 HANLRALFRATEPvfkfnedDSTVLFHSy-aFDFSVWEMWSVLAyGGKLVIPDnetrl-tpskLAQLVHDqkITLLNQTP 249  Proteobacteria
Feature 1                                                 ##                      ######          
3VNQ_A        275 TAFLAlteaavr--------------ggrdvsGLRYVIFGGEKLTAPMLRPWakafgldrpRLVNGYGITETTVFTTFEE 340  Streptomyces sp.
5APB_A        259 TAFGAlttavlg--------------egidlpELRYVVFGGEKLTPAVVRPWakrfgldrpHLINMYGITETTVHATFHR 324  Streptomyces sp.
P39846       1740 TAFYGlmledq---------------nhtdhlNIRYVIFGGEALQPGLLQSWneky--phtDLINMYGITETTVHVTFKK 1802 Bacillus subt...
AAK27469     1478 STFERlvdeldr-------------rpgrapdRLRYVVLGGEPIRPGAVRRFaghv--pgaDVVNGYGITETTVFTTFKR 1542 Streptomyces ...
AAF99707      702 SAFRQliaaqd---------------dkeqvhSLRQVIFGGEALETAMLKPWyarkvnastQLVNMYGITETTVHVTYYP 766  Pseudomonas s...
ABL74939      754 SACRHllpaala--------------ddprraALALVVLGGESCEVATLGPWfeamdhsgpELVNMYGITETCVHVTVRP 819  Streptoallote...
P45745       1765 SAFYQfmqaereq------------pdlgqalSLRYVIFGGEALELSRLEDWynrhpenrpQLINMYGITETTVHVSYIE 1832 Bacillus subt...
WP_012268172  714 TAFRQliqaeeslkgsfplsrgdrssttdndlSLRLVIFGGEALEINSLQSWfqrhgdqcpQLVNMYGITETTVHVTYRP 793  Microcystis a...
NP_251089    1805 SAFKQlmavacsa------------dmatqqpALRYVIFGGEALDLQSLRPWfqrfgdrqpQLVNMYGITETTVHVTYRP 1872 Pseudomonas a...
YP_003614437  250 GAFSVnaswlcq--------------fpkgslALRFIIFGGERLNFQMLKQWqqhfglmspLLVNMYGITETTVHSSWHI 315  Proteobacteria
Feature 1                        #                                                                
3VNQ_A        341 Iteayl---aqdaSIIGRALPs--FGTRVVGddgrdvapgeTGELWLSGaqLAEGYLRRPELTAEKFpevtde------- 408  Streptomyces sp.
5APB_A        325 Lteddl---aaedSVIGRPLPg--FTHRIVTedgrdaatgePGELWLAGpqVSEGYLNRPELTAERFttgpard------ 393  Streptomyces sp.
P39846       1803 Lsaadi---aknkSNIGRPLSt--LQAHVMDahmnlqptgvPGELYIGGegVARGYLNRDELTADRFvsnpy-------- 1869 Bacillus subt...
AAK27469     1543 LdpseapgppsdaQNIGRPIGt--TSVDLLDadgrpvpdgaVGEIVISGptVARGYLGRPDETARVFgthapd------- 1613 Streptomyces ...
AAF99707      767 Lqpeda--rrvgaSPIGKRIPd--LQLYLLDayghplppgaVGELYVGGagVARGYLNRDELNTTRFlddpfa------- 835  Pseudomonas s...
ABL74939      820 Lraadv--dgaarSPIGGPLPg--QRIAVVDqngvrvpvggQGELFVGGvgVARGYLGQPALTADRFrpdpa-------- 887  Streptoallote...
P45745       1833 Ldrsma--alranSLIGCGIPd--LGVYVLDerlqpvppgvAGELYVSGagLARGYLGRPGLTSERFiadpf-------- 1900 Bacillus subt...
WP_012268172  794 Lsmtdl---dstaSVIGRPIPd--LQVYLLDqylqlvpvgvPGEMYVGGagVTKGYLNRPELTKERFisspfekdevipp 868  Microcystis a...
NP_251089    1873 Vseadl--kgglvSPIGGTIPd--LSWYILDrdlnpvprgaVGELYIGRagLARGYLRRPGLSATRFvpnpfp------- 1941 Pseudomonas a...
YP_003614437  316 Isnddl---ehteSIIGELLPgfdYIIRPLDesdl---rsgYGELLLCGsqVTPGYLNQNNETNGKFilaek-------- 381  Proteobacteria
Feature 1                          #           #  #                                               
3VNQ_A        409 -----ktgesvRYYRTGDLVSELpdGRFAYEGRADLQIKLRGYRIELSDIETAVRRHDd-vVDAVVTVREfkpgdLRLVC 482  Streptomyces sp.
5APB_A        394 -----ggapppRYYHSGDLVSRRagGDLVYQGRADLQVKLRGHRIELSDVEAAVRTHPa-vVDAVVWVHEfapgdSRLVC 467  Streptomyces sp.
P39846       1870 -------lpgdRLYRTGDLAKRLsnGELEYLGRIDEQVKVRGHRIELGEIQAALLQYPm-iKEAAVITRAdeqgqTAIYA 1941 Bacillus subt...
AAK27469     1614 ------glpprRRYRSGDLARRLpsGDLVFAGRRDRQVKIRGHRVELDEVRAAILGTGlltGDAATDARTgsagtPSLVA 1687 Streptomyces ...
AAF99707      836 ------sapgaRMYRSGDLGRWLpdGSLEYLGRNDEQVKIRGFRIELGEIEARLSACEg-vRDAVVVVREdepgdQRLVA 908  Pseudomonas s...
ABL74939      888 -------rpgaRGYRSGDLARALpdGELDYRGRLDKQVKLRGYRIEPGEVEAAALAHPs-vRAGVVVPRTdg-grTYLAA 958  Streptoallote...
P45745       1901 ------gppgtRMYRTGDVARLRadGSLDYVGRADHQVKIRGFRIELGEIEAALVQHPq-lEDAAVIVREdqpgdKRLAA 1973 Bacillus subt...
WP_012268172  869 tplnkggnepsKLYKTGDLARYLpkGELEYLGRIDNQVKIRGFRIELGEIEALLASHPq-iWETVVIVRDdatgdKRLVA 947  Microcystis a...
NP_251089    1942 ------ggageRLYRTGDLARFQadGNIEYIGRIDHQVKVRGFRIELGEIEAALAGLAg-vRDAVVLAHDgv-ggTQLVG 2013 Pseudomonas a...
YP_003614437  382 ------nnitkRYYCTGDLVQYNstGKLVYMGRCDQQVKINGYRIEIGEIESVLARLEs-iIDISVITSHsetlgHHLVC 454  Proteobacteria
Feature 1                                                            #      
3VNQ_A        483 AYVAreg-------satTARELRNHIKTllPAYMHPARYLPLPgLPRTVNGKVDRAAV 533  Streptomyces sp.
5APB_A        468 AYTAqasee----gtgpDARALRAHVKTvlPSYMQPSQYLALPeLPRTINGKADRASV 521  Streptomyces sp.
P39846       1942 YMVIkdq-------qaaNISDIRTYLKNalPDFMLPARMIQIDsIPVTVNGKLDQKAL 1992 Bacillus subtilis
AAK27469     1688 YVDDrd---------reRIPALRRRLREllLPAMVPDRFVTVAdWPVTASGKVDLDAL 1736 Streptomyces verticillus
AAF99707      909 YVIGtag-------qepDATWLREQLRLslAEHMLPSAFVSLEaFPLTANGKLDRKAL 959  Pseudomonas syringae pv. syringae
ABL74939      959 YLVLadgtrdqhaaadaARAELRAFLAErlPRHMVPAAFVFVDrIPLTRNGKLDEAAL 1016 Streptoalloteichus hindustanus
P45745       1974 YVIPsee--------tfDTAELRRYAAErlPDYMVPAAFVTMKeLPLTPNGKLDRKAL 2023 Bacillus subtilis subsp. subtilis s...
WP_012268172  948 YIVPqse-------ktiTINEIRQFLKAklPSYMIPNAFVILDaLPLTANGKIDSRAL 998  Microcystis aeruginosa
NP_251089    2014 YVVAdsae-----daerLRESLRESLKRhlPDYMVPAHLMLLErMPLTVNGKLDRQAL 2066 Pseudomonas aeruginosa
YP_003614437  455 CFASndn-------kadVIEQLHKLAKEllPFYMRPIRYRGFDaIPKTINGKIDKQHL 505  Proteobacteria

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