1W25,2WB4,2V0N


Conserved Protein Domain Family
REC_D1_PleD-like

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cd17538: REC_D1_PleD-like 
Click on image for an interactive view with Cn3D
first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains
PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.
Statistics
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PSSM-Id: 381093
Aligned: 48 rows
Threshold Bit Score: 157.66
Created: 9-Nov-2016
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: metal binding site [ion binding site], 3 residue positions
Conserved feature residue pattern:[ED] [ED] [ED]Click to see conserved feature residue pattern help
Evidence:
  • Structure:1W25: Caulobacter vibrioides PleD D1 binds Mg2+
  • Comment:signal transduction in two-component systems is mediated by metal ion dependent phosphorelay reactions between protein histidine kinases and phosphoaccepting receiver domains in response regulator proteins
  • Comment:for many receivers, Mg2+ is the preferred metal ion, but other divalent ions such as Mn2+ are also used
  • Structure:2V0N: Caulobacter crescentus PleD D1 binds Mg2+

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                      ##                                          #                              
1W25_A                  3 RILVVDDIEANVRLLEAKLTAEYyEVSTAMDGPTALAMAARDlPDIILLDVMMPGMdgFTVCRKLKDDpttrHIPVVLIT 82   Caulo...
OGQ84429                6 KILVVDDTPRNVKLLADVLTVKGyAVVTAASGAEALKQVEAEkPDLVLLDVVMPEMsgYEVCRRIRENpatgILPVVMVT 85   Delta...
OGA18630                5 RILVVDDTPANVKLLADLLTIKGyEVATAPNGEEGLKRLAEQrPDLVLLDVMMPGIngYEVCRAIRADpstgVLPVVMVT 84   Betap...
SCX22363              135 TILAVDDAPANLRLLEAVLTPHGyRIVTAASGAEALDILSREnIDLVLLDVVMPEMdgHEVCRRIRAVpsteFLPVVMIT 214  Mycob...
ABD02107               23 HLLIVDDQPNSRLLLGDLLQSIGyRVSEAESGNQALQMLKTFqPDLILLDVMMPGLdgFEVCRRIKANdetrLIPVVLVT 102  Synec...
WP_012637091           27 TLLVVDDQEVNRLILARHLELLGhRVLQADSGPQALQILREQsVDGVVLDVVMRGMdgYEVCRRIKADpetwFIPVVMVT 106  Thioa...
BAP56465             1263 KILVVDDQPYDSLLISAYLREEGyQVLLAHSGEEAFQLVISQtPNIVLSDVMMPGMngFEVCQRIKEReasmLTPVVLIT 1342 Thiop...
WP_051283781          184 TILVADDDPKNLKIMKTLLDSMGyRVMACDSGAGAVSIIRETpPDLVILDVMMPGMdgFEICKRLKSRegtrQIPIILLT 263  Desul...
cyanolab:BMF81_04198   95 TILVVDDHTMSRISAAALLSMEGyEVIEAESGHTALLMVKQKqPDLILLDVMMPIMdgFEVCQRLKQDehtrLIPIIFIT 174  Nodul...
NP_252036              12 TILIAEDNAADRLLLSTIVSRQGhRVLTAGNGLEAVALFETErPQLVLMDVMMPVMdgFEAARRIKQQageeLVPIIFLT 91   Pseud...
Feature 1                                         
1W25_A                 83 AldgRGDRIQGLESGASDFLTKPI 106  Caulobacter crescentus CB15
OGQ84429               86 AldpTEERIKGLDAGADDFLTKPI 109  Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19
OGA18630               85 SldpAQERIKGLEAGADDFLTKPI 108  Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14
SCX22363              215 As-gGEQRLTALESGADDFVSKPF 237  Mycobacterium sp. UNC267MFSha1.1M11
ABD02107              103 AasdHKNRVRGIEAGADDFLSKPF 126  Synechococcus sp. JA-2-3B'a(2-13)
WP_012637091          107 VlnnQADRVRAMEAGADEFLSKPV 130  Thioalkalivibrio sulfidophilus
BAP56465             1343 SldgQEDRIKGIHAGADEFLSKPI 1366 Thioploca ingrica
WP_051283781          264 AlndRESKIRGIESGADDFISKPA 287  Desulforegula conservatrix
cyanolab:BMF81_04198  175 AlndRRSRIRGIEVGADDFLSKPF 198  Nodularia spumigena UHCC 0039
NP_252036              92 SlseTEALVQSLEAGGDDFLSKPY 115  Pseudomonas aeruginosa PAO1

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