4ML3,4MLD,4CBV


Conserved Protein Domain Family
REC_LytTR_AgrA-like

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cd17533: REC_LytTR_AgrA-like 
Click on image for an interactive view with Cn3D
phosphoacceptor receiver (REC) domain of LytTR/AlgR family response regulators similar to AgrA
Members of the LytTR/AlgR family of response regulators contain a REC domain and a unique LytTR DNA-binding output domain that lacks the helix-turn-helix motif and consists mostly of beta-strands. Transcriptional regulators with the LytTR-type output domains are involved in biosynthesis of extracellular polysaccharides, fimbriation, expression of exoproteins, including toxins, and quorum sensing. Included in this AgrA-like group of LytTR/AlgR family response regulators are Staphylococcus aureus accessory gene regulator protein A (AgrA) and Streptococcus pneumoniae response regulator ComE, which are members of two-component regulatory systems. AgrA is a global regulator that controls the synthesis of virulence factors and other exoproteins. ComE is part of the ComD-ComE system that is part of a quorum-sensing signaling pathway that controls the development of competence, a physiological state required for genetic transformation. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.
Statistics
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PSSM-Id: 381088
Aligned: 22 rows
Threshold Bit Score: 111.175
Created: 9-Nov-2016
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:homodimer interface [polypeptide binding site]
Evidence:
  • Comment:phosphorylation of the receiver domain mediates dimerization of the protein and relieves the inhibition of the effector domain as DNA binding
  • Structure:4MLD: Streptococcus pneumoniae ComE dimer interface, contact at 4A
  • Comment:ComE belongs to the AlgR/AgrA/LytR transcription factor family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
4ML3_A         1 MKVLILEDVieHQVRLERILDEISKEsn--ipISYKTTGKVr----EFEEYien-devNQLYFLAIDIHGIEk----KGF 69  Streptococcus p...
4MLD_A         1 MKVLILEDVieHQVRLERILDEISKEsn--ipISYKTTGKVr----EFEEYien-devNQLYFLEIDIHGIEk----KGF 69  Streptococcus p...
CAR88283       8 LNIYILEDNpdYLTFIQETVQQYLLIeelpakIRLATTSAT-----ELLAAvdwsainDSIFLLDIELGDSAt----SGV 78  Lactobacillus r...
CAA88427       2 YPVYLLEDDlqQQAIYQQIIANTIMIn----eFAMTLTCAAsd-teTLLAAikd--qqRGLFFLDMEIEDNRq----AGL 70  Lactobacillus s...
CAA89196       1 MKIFVCEDDqrQREHMVSIIKNYIMIe----eKPMELTLATnv-pyEVLEQske-lndIGCYFLDIQLEADM-----NGI 69  Staphylococcus ...
AAD29136       3 YPIILCEDQiiQLNQLERIIDNFILFh----dKVFKIVLKTqs-plEVKKYlkqfrpkQGIYFLDIDLNHEV-----NGI 72  Enterococcus fa...
YP_001089120   1 MDILIFDNDvcFGMKLKEKINNILIKegf-dnDVVRLYHNAnlllkELTEKn-----kVRIYFIVVDAKYKIsnelcDGL 74  Clostridioides ...
YP_001089771   2 FRVVICDDEkiQRSILKEFTEKLLSErc--lnYQILEFSCGe----DLISKy-----pEKIDIIFLDIQMKDi----NGI 66  Clostridioides ...
YP_001088246   2 ISIAICDDEsyMLNHLKENIELYMKQkn--llYNIELFNKVe----NLLCNh------EKFNIVFLDIQMEEi----NGM 65  Clostridioides ...
YP_001087086   2 TSICICDDEkqQRNMLNKIITREMDLwg--ypYQIKEYSNG-----ESLVYnle-henYYIDIIFLDIELGKs----NGV 69  Clostridioides ...
Feature 1              #                 #  ##    #####                  #   #   #
4ML3_A        70 EVAQLIRHYnpYAIIVFITSrSEFATLTYKYqvSALDFVDKDi---nDEMFKKRIEQNIFYTKSM 131 Streptococcus pneumoniae R6
4MLD_A        70 EVAQLIRHYnpYAIIVFITSrSEFATLTYKYqvSALDFVDKDi---nDEMFKKRIEQNIFYTKSM 131 Streptococcus pneumoniae R6
CAR88283      79 DVATAIRRKsyYVDILFITShVDEALRILEHkiAPLDMINKNs----PSKTEKKIRNNILYAIKR 139 Lactobacillus rhamnosus GG
CAA88427      71 EVATKIRQMmpFAQIVFITThEELTLLTLERkiAPLDYILKDq---tMAEIKRQLIDDLLLAEKQ 132 Lactobacillus sakei
CAA89196      70 KLASEIRKHdpVGNIIFVTShSELTYLTFVYkvAAMDFIFKDd----PSELKMRIIDCLESAHTR 130 Staphylococcus epidermidis
AAD29136      73 ELAEVIRKYdvQAKIIFTTThDEMLPVTIKRrvETLGFVTKDq---tLDEYRNEIVELLLLAQER 134 Enterococcus faecium
YP_001089120  75 WIAQKIRESdyISPIIFLTNhIEMILGIFDYrlEVMDFILKHd----MEIAESKIKACIKIAHKR 135 Clostridioides difficile 630
YP_001089771  67 EVAKKIRKFdeKVEIIFTTAfSEYAPQGYEV--RAYRYLVKPi---eYSNFAMGVNLCIDNLQRK 126 Clostridioides difficile 630
YP_001088246  66 QAARKLRSYgnECFIIFVTVlNEFVFDAFEV--DAINYLIKPlsnekLYKTLDKIVTKLDDNESN 128 Clostridioides difficile 630
YP_001087086  70 DIAKTIRKHskDTIIIFVTGfSDYVFHGYDV--GALNYILKPy---kTEKICKVLKEALKKLEQW 129 Clostridioides difficile 630

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