5FRK


Conserved Protein Domain Family
YbjN_AmyR-like

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cd17511: YbjN_AmyR-like 
Click on image for an interactive view with Cn3D
YbjN protein family is structurally similar to type III secretion system chaperones
This YbjN protein family includes Escherichia coli YbjN, Erwinia amylovora AmyR, and similar proteins. YbjN proteins share a class I type III secretion chaperone (T3SC)-like fold with type III secretion system (T3SS) chaperone proteins but appear to function independently of the T3SS. YbjN is an enterobacteria-specific protein. In E. coli, it acts as a sensory transduction regulator that may play important roles in regulating bacterial multicellular behavior, metabolism, and survival under stress conditions. E. amylovora AmyR, a functionally conserved ortholog of E. coli YbjN, is a stress and virulence associated protein that regulates the ams operon. Ams proteins are required for amylovoran biosynthesis. AmyR may also regulate the Rcs phosphorelay system, an atypical two-component signal transduction (TCST) system present only in Enterobacteriaceae and positively regulates amylovoran biosynthesis by activating the ams operon transcription.
Statistics
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PSSM-Id: 409323
Aligned: 34 rows
Threshold Bit Score: 69.3246
Created: 7-Jun-2017
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interface
Conserved site includes 23 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Structure:5FRK: Erwinia Amylovora amylovoran repressor AmyR homodimer interface; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                       #      # #                     ##
5FRK_A        11 PDLDVLRRWLDQQSItwf---ecDSCQALHLPhxqnfdgVFDAKIDLXd----GVILFSALAEvkptal---iplagdLS 80  Erwinia amylovo...
Q8NNT4       259 VTLERIRAQLHAIGVvk-----tSGEDDFIIAwin--evFLGFFVDNG-----PTFLVKGHWDpsmdptrdfmklfmmCN 326 Corynebacterium...
Q8NQ36        16 FNLDAVAGILQDEKLdyr---idEHDGEKVIR-------TGFINAAISfilldGSLTMEAMWRgapstda-aaqvlaaTN 84  Corynebacterium...
ACZ30281      91 LSRDRVAAWLERSGFay----ftDSDGDLGGLwhg--rlFYFLVLGDRd----EVLQVRGQWHreatier-leelleaCN 159 Xylanimonas cel...
WP_004007037  30 LTRDRVKKVLESHKWsy----qvNHDGDVGGAwqn--giYYFQVTGEKd----TILCVRGTWRgepeldd-filinsiCN 98  Mobiluncus curt...
WP_010186821  24 VSLERIAEIFESEGLeyrieeqkTQDGQTVNLl-----rTGFSNAAIAfqlvgSSLIVDSVWRgsvpase-gpallmhIN 97  Corynebacterium...
WP_012804678  12 LSLTRVEESLTRHGYaf----veDEEHPEILRarfddyrFQFMVSGDEh----GVLQTRGRWShsvdvsr-kvqmvklCN 82  Brachybacterium...
WP_015771329  31 VTRERVAHVLTAAGYqh----trDSDGDIVGVwdg--ntVWFLLLGPEe----TFLQVRSRWQraigpqg-mdaallaVS 99  Jonesia denitri...
WP_015771330  42 LSQDHITTWLTAHDLpy----fiDSDGTAGAIhta--riFTFALIGQHk----EVLHIRGRWNrhatier-aeqiralCN 110 Jonesia denitri...
WP_012257296  15 VNRAWLFQLYNDAYFdv----elDSDGDVCLRqg---frVWVFPIREG-----EQIRFMSQFRanpdrdl--adrilyVN 80  Chloroflexus
Feature 1          ## ##### ##             ## #    ###   #  #   #            
5FRK_A        81 QINASSLTVKAFLDiqddnlpKLIVCQSLSAa--AGLTYGQFVHFXKESEEQISXIVXEA 138 Erwinia amylovora CFBP1430
Q8NNT4       327 QWNENSLTTKAFCHtdd-kglQVRVEFAVSVa--EGLNDDQLQHNIALSIHHILQAIDSI 383 Corynebacterium glutamicum
Q8NQ36        85 EWNLTQFAPTIRFFelnegtlAINALRHVVVs--AGMSHNQVGSYVMSSIESAVQCFEWL 142 Corynebacterium glutamicum
ACZ30281     160 EWNAEHIWPKTYTRvrd--dgSVVVCADTTVdveHGVTDDQLDQLLQCGLSTGSMFFDHL 217 Xylanimonas cellulosilytica DSM 15894
WP_004007037  99 RWNTEYYWPKAYARvte--drEVYVHTELPIswrNGLTDAQLDEQVRCALESSEDFFEQL 156 Mobiluncus curtisii
WP_010186821  98 AWNQDHFTPTFRFFeapdnalAVSGARDLDVa--HGASRNQLGAFVMSTLDAVLQSFEWI 155 Corynebacterium aurimucosum
WP_012804678  83 EWNMNRIWPKVYVRres--egLLGVYGELAAdfrAGALDSQIDSAITCGLSTVIAFFHSL 140 Brachybacterium faecium
WP_015771329 100 DWNRDHLWPKVFLReegpqswAAYTETTHDFc--DGATSDQLDYYLHVALQTTAQFYDHM 157 Jonesia denitrificans
WP_015771330 111 DWNTTKIWPKAYHRvrddgiiEVYGESNMDFe--HGATYDQVGTTLACAIQTTTQFFDEL 168 Jonesia denitrificans
WP_012257296  81 RINDELHIVRSYVDrs----gDIGFDGYLVVs--GGVTRRNIIFATRTFIDHVRAALAKD 134 Chloroflexus

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