Conserved Protein Domain Family
MFS_SV2A

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cd17439: MFS_SV2A 
Synaptic vesicle glycoprotein 2A of the Major Facilitator Superfamily of transporters
Synaptic vesicle glycoprotein 2 (SV2) is a transporter-like integral membrane glycoprotein, with 12 transmembrane regions, expressed in vertebrates and is localized to synaptic and endocrine secretory vesicles. Three isoforms have been identified, SV2A, SV2B, and SV2C. SV2A and SV2B are widely expressed in the brain, while SV2C is more restricted to evolutionarily older brain. SV2 isoforms have been shown to be critical for the proper function of the central nervous system. SV2 serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. It is unclear how SV2A is involved in correct SV function, but it has been suggested to either act as a transporter or a regulator of exocytosis by mediating Ca2+ dynamics. SV2A has been identified as the molecular target of the antiepileptic drug levetiracetam (LEV). Its expression is decreased in patients with epilepsy and in epileptic animal models. SV2A belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.
Statistics
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PSSM-Id: 340997
Aligned: 5 rows
Threshold Bit Score: 932.136
Created: 29-Feb-2016
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding pocket [chemical binding site]
Evidence:
  • Comment:based on the structures of MFS transporters with bound substrates, substrate analogs, and/or inhibitors
  • Comment:since MFS proteins facilitate the transport of many different substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides, the residues involved in substrate binding may not be strictly conserved among superfamily members
  • Comment:the substrate binding site or translocation pore has access to both sides of the membrane in an alternating fashion through a conformational change of the MFS transporter

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  ##  ##  #                               #                             
Q29397       169 YFVLGLALMADGVEVFVVGFVLPSAEkdmcLSDSNKGMLGLIVYLGMMVGAFLWGGLADRlGRRQCLLISLSVNSVFAFF 248 cattle
XP_696434    161 YFVLGLALMADGVEIFVVGFVLPSAEkdmcLSEPNKGMLGLIVYLGMMVGAFVWGGLADRiGRRQTLLISLSINSVFAFF 240 zebrafish
XP_012825002 156 YFVLGLALMADGVEIFVVGFVLPSAEkdmcLSDSNKGMLGLIVYLGMMVGAFLWGGMADRiGRRQCLLISLSVNSVFAFF 235 tropical clawed...
XP_005991700 156 YFVLGLALMADGVEVFVVGFVLPSAEkdmcLSDSNKGMLGLIVYLGMMVGAFLWGGLADKiGRRQCLLICLSVNSVFAFF 235 coelacanth
XP_010563911 155 YFVLGLALMADGVEVFVVGFVLPSAEkdmcLSDSNKGMLGLIVYLGMMVGAFLWGGLADRlGRRQCLLISLSVNSVFAFF 234 bald eagle
Feature 1                            ## ###  #                   #  ##  #                        
Q29397       249 SSfvqgygtFLFCRLLSGVGIGGSIPIVFSYFSEflaqekRGEHLSWLCMFWMIGGVYAAAMAWAIIPhygwsfqmgsay 328 cattle
XP_696434    241 SSfvqgyssFLFCRLLSGVGIGGSIPIVFSYYSEflaqekRGEHLSWLCMFWMIGGIYAAAMAWAIIPhygwsfqmgsay 320 zebrafish
XP_012825002 236 SSfvqgygtFLFCRLLSGVGIGGSIPIVFSYFSEflaqekRGEHLSWLCMFWMIGGIYASAMAWAIIPhygwsfqmgsay 315 tropical clawed...
XP_005991700 236 SSfvqgygtFLFCRLFSGVGIGGSIPIVFSFFSEflaqekRGEHLSWLCMFWMIGGIYASAMAWAIIPhygwsfqmgsay 315 coelacanth
XP_010563911 235 SSfvqgygtFLFCRLLSGVGIGGSIPIVFSYFSEflaqekRGEHLSWLCMFWMIGGIYASAMAWAIIPhygwsfqmgsay 314 bald eagle
Feature 1                                                                                        
Q29397       329 QFHSWRVFVLVCAFPSVFAIGALTTQPESPRFFLENGKHDEAWMVLKQVHDTNMRAKGHPERVFSVTHIKtihqedelie 408 cattle
XP_696434    321 QFHSWRVFVLVCAFPSVAAIAALTTMPESPRFYLENGKHDEAWMILKQVHDTNMRAKGYPERVFSVTTIKtvkqmdelvd 400 zebrafish
XP_012825002 316 QFHSWRVFVLVCAFPSVFAIGALTTMPESPRFFLENGKHDEAWMVLKQVHDTNMRAKGHPERVFSVTQIKtikqddelve 395 tropical clawed...
XP_005991700 316 QFHSWRVFVLVCAFPSVAAIAALTTMPESPRFYLENGKHDEAWMILKQVHDTNMKAKGHPERVFSVTHIKtvkqedelie 395 coelacanth
XP_010563911 315 QFHSWRVFVLVCAFPAVFAIGALTTMPESPRFFLENGKHDEAWMVLKQVHDTNMRAKGHPERVFSVTHIKtikredelie 394 bald eagle
Feature 1                                                     #  ##  ###  #                      
Q29397       409 iqsdtgawyqrwgvralslggqvwgnflscfgpeyRRITLMMMGVWFTMSFSYYGLTVWFPDMIRHLQavdyaartkvfp 488 cattle
XP_696434    401 mggeatawhqrwrikltnlfhqvwgnfltvfnpeyRRITYMMMAVWFSMSFSYYGLTVWFPDMIKYLQkqeyssrtkvfi 480 zebrafish
XP_012825002 396 iqsdtgalhrrwmikllnlsqevwanfhqcfapeyRRITLMMMAVWFTMSFSYYGLTVWFPDMIKHLQnidyasrtkyfh 475 tropical clawed...
XP_005991700 396 iqadtgswhrrwmvrimtlghqvwtnflqcfspeyRRTTLMMMAVWFTMSFSYYGLTVWFPDMIKYLQnkeyasrtkvfy 475 coelacanth
XP_010563911 395 iqsdtgtwyrrwlvrflnlsqqvwsnfqqcfapeyRRVTLMMMAVWFTMSFSYYGLTVWFPDMIKHLQnieyasrtklft 474 bald eagle
Feature 1                                                                                        
Q29397       489 gervehvtfnftlenqihrggqyfndkfiglrlKSVSFEDSLFEECYFEDVTSSNTFFRNCTFINTVFYNTDLFEYKfvn 568 cattle
XP_696434    481 kekvehvtfnftlenqihrngeyfnnkflnlkmKSMVFEDSLFEECYFEDITSSNTFFRNCTFISTLFYNTDLFKYRlin 560 zebrafish
XP_012825002 476 nesvnnfnfnftlenqvhrkgeyhndkfiglklKSVIFEDSLFTDCYFEDITSSNTFFKNCSFIRTMFYNTDLFDYKfin 555 tropical clawed...
XP_005991700 476 rekvehftfnftlenqihkngeyfndkfiglkmKSVVFEDSMFEECYFEDITSSNTFFKNCTFISTLFYNTDLFEYKfin 555 coelacanth
XP_010563911 475 hekvrhftfnftlenqihkggeyfndkfiglrmKSVTFEDSLFEECYFEDITSSNTFFKNCTFISTVFYNTDLFEYKfin 554 bald eagle
Feature 1                                               #   #                                    
Q29397       569 srlvnstflhnkegcpldvtgtgegaYMVYFVSFLGTLAVLPGNIVSALLMDKiGRLRMLAGSSVMSCVSCFFLSfgnse 648 cattle
XP_696434    561 sklinstflhn-kegcmldfsdennaYMIYFVSFLGTLAVLPGNIVSALLMDKiGRLRMLAGSSVISCVSCFFLSfgnse 639 zebrafish
XP_012825002 556 skftnstflhskegcqldfsddinnaYMIYFVSFLGTLAVLPGNIVSALLMDKiGRLRMLAGSSVMSCISCFFLFfgnse 635 tropical clawed...
XP_005991700 556 skvinstflhn-kegcqldfsdennaYMIYFVSFLGTLAVLPGNIVSALLMDKiGRLRMLAGSSVMSCISCFFLSfgnse 634 coelacanth
XP_010563911 555 sevvnstflhn-kegcqldfsddnnaYMIYFVSFLGTLAVLPGNIVSALLMDKiGRLRMLAGSSVMSCVSCFFLSfgnse 633 bald eagle
Feature 1                    ##   #   #               #  ##  ##  #                               
Q29397       649 SAMIALLCLFGGVSIASWNALDVLTVELYpsdkRTTAFGFLNALCKLAAVLGISIFTSFvgitKAAPILFASAALALGSS 728 cattle
XP_696434    640 SAMIALLCLFGGISIASWNALDVLTVELYpsdkRTTAFGFLNALCKLAAVLGISIFQSFvgitKAVPILFASGALAAGSF 719 zebrafish
XP_012825002 636 SAMIALLCLFGGVSIASWNALDVLTVELYpsdkRTTAFGFLNALCKLAAVLGISIFTSFvgvaKAVPILLASAALAVGSF 715 tropical clawed...
XP_005991700 635 SAMIALLCLFGGVSIASWNALDVLTVELYpsdkRTTAFGFLNALCKLAAVLGISIFTSFvgitKAVPILLASTALAAGSS 714 coelacanth
XP_010563911 634 SAMIALLCLFGGVSIASWNALDVLTVELYpsdkRTTAFGFLNALCKLAAVLGISIFTSFvgitKAVPIFLASAALALGSS 713 bald eagle
Feature 1                 
Q29397       729 LALKLPETR 737 cattle
XP_696434    720 LALKLPETR 728 zebrafish
XP_012825002 716 LALKLPETR 724 tropical clawed frog
XP_005991700 715 LALKLPETR 723 coelacanth
XP_010563911 714 LALKLPETR 722 bald eagle

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