1KCF


Conserved Protein Domain Family
CCE1

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cd16963: CCE1 
Click on image for an interactive view with Cn3D
fungal mitochondrial Holliday junction resolvases similar to Saccharomyces cerevisiae CCE1
Saccharomyces cerevisiae Cruciform cutting endonuclease 1 (CCE1) is a Holliday junction resolvase specific for 4-way junctions. CCE1 is involved in the maintenance of mitochondrial DNA. Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. Holliday junctions are formed by the reciprocal exchange of strands between two DNA duplexes. HJRs occur in archaea, bacteria, and in the mitochondria of certain fungi; they may form homodimers and display structural similarity to RNase H and Hsp70.
Statistics
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PSSM-Id: 438563
Aligned: 39 rows
Threshold Bit Score: 196.815
Created: 14-Dec-2016
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
putativehomodimer
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:putative nucleic acid substrate binding site [nucleic acid binding site]
Evidence:
  • Comment:based on the structure of the related HJR, Thermus thermophilus RuvC, in complex with a Holliday Junction substrate

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                              ###                       
1KCF_A         6 LSFLQHICKLTGlsrsGRKDELLRRIVDSpiy------------ptsRVLGIDLGIKNFSYCFASQNed-----skVIIH 68  Schizosaccharom...
XP_002175832   5 VSFLRDSCMLTGlstvGRKAELLQKLISTpvh------------ttkNVLAVDLGIHNLAVCSLSASkqg----esPVIH 68  Schizosaccharom...
CEP24385       9 IAQLRKLCLLTGtrsgGVKSQIIANIRQDltnkssltrrlpndgdkyRIISVDMGLKNFALTKLALNkrlp-fntvPMIT 87  Cyberlindnera j...
OBZ91534      24 VPELKSIAIQSGvnvtGTKPEVINRLVDCfeqsq--------kqqtrSVLSFDLGYRNLAYCHLDRD---------ANII 86  Choanephora inf...
CEP14451      23 AAELKDIATQCGiltsGTKGDLMNRLTAHfaspa---------qsssSILSFDLGYRNLAYCHLSAD---------RTVL 84  Parasitella par...
XP_001485518  12 ADTLAQLSILCGlpvqSTKAARTQSLLDGlkigak-------lptnmRVLAVDMGIKNFSYCQTVAKs-------kPTIE 77  Meyerozyma guil...
XP_460052     14 NDVLSQVCTTCGltvkPRKQDKIDAITNGmqmvar-------lpakvNVLAIDVGVKNLSYCKLSQVgiggderptLDID 86  Debaryomyces ha...
SGZ46808       6 TATLNSLALHCGyptaSTKAARVAAMANYdaffss-------lpaspTIVSVDVGIKNFSYCKVAHSdt------qVSIV 72  Candida intermedia
XP_028890787   7 IATLHGIALHCGypavANKTERIKAIEETshlyss------ikpaplNILSIDVGIKNFSYAKASYErple-qarsFKLH 79  [Candida] auris
XP_023467846  23 LVELREIARSSGiyqqGTKSDIIQRLVSElpsk-----------tpsSILSFDLGYRNLAYCVVTQD---------ATIL 82  Rhizopus micros...
Feature 1             #  #                     #                            ### # #      #  ##   
1KCF_A        69 NWSVENLTEkngldiq------wtedfqPSSMADLSIQLFNTLHEKFn---PHVILMERQRYRSGIa-tIPEWTLRVNML 138 Schizosaccharom...
XP_002175832  69 HWLMDDLCRpdnvfgv-----kwsgkfeLPEIADLAYQLLARLHVLFq---PQYILLEKQRFRTGRa-tIPEWTLRVNSL 139 Schizosaccharom...
CEP24385      88 EWDKYDVQLwanvgt--------ddtfePQKYVEPCYRLVNEILLPRgeplPDALLIERQRSRSGGspvVNEWVFRVNML 159 Cyberlindnera j...
OBZ91534      87 DWARIDLNLts---------------fhPSAIAPVVRTLVQTHLSDPlk-aADKVLIEQQRARTGGshnVLEATMRVNCV 150 Choanephora inf...
CEP14451      85 DWARVDLDLps---------------fhPSVVAPIVRKFIKDKVLENlk-vADRVLVEQQRARTASsvgVFEHTLRVNCV 148 Parasitella par...
XP_001485518  78 KWTKVDLNNeygatfkaltsdpgslidsRRYLSHLAYNIVSTIIKDK----PHLIMVETQRTRSNNmnsTLPNVLLNYTL 153 Meyerozyma guil...
XP_460052     87 QWKKIDLHEqygstyrpltndmtslvdsKRYLSHLAFELVNDIVIRRde-tPHVIVVENQRTRSNQlssTLPNVLLNYTL 165 Debaryomyces ha...
SGZ46808      73 DWNHLNLHEkygstyrprttdpdslvdsKAYMAHMSVGVVNDILMPQgr-wPDIITIENQRTRSNGktsTLPNVLLNFTL 151 Candida intermedia
XP_028890787  80 DWNHVNLHDqfgassa-----nsstslpKTYLARLADSVVNKIILSDsw-vPSVILMESQRTRSNTnsvTLPNVLLNYTL 153 [Candida] auris
XP_023467846  83 DWARIDLELtt---------------fhPSVVAPVVRKFIKDRIEYNmk-tVDLVLVEQQRARSNGswtVLEHTLRVNSI 146 Rhizopus micros...
Feature 1                                      #                                                 
1KCF_A       139 ESMLYALHYAEKrnsieqkiqyPFLLSLSPK---STYSYWASVLntka-------------sfskKKSRVQMVKELIDGq 202 Schizosaccharom...
XP_002175832 140 ECMLHGIHYAQRqids--akpqSRLLAINPK---QAYTYWSRTTdchvtg---------qtyannKSCRVDLVRELLATn 205 Schizosaccharom...
CEP24385     160 EAMVHSMVYSRIcee----rskIEVISASPQ---RMGYYWKPLDdevk-------------gkvaKKFRVGYVEQLLADf 219 Cyberlindnera j...
OBZ91534     151 EAILWTSLYDAIdql-----nrAKQIEMLPIlrqRVDRLWQTELdrvtaenvetfskaksnyylkKQASSLLVQNWLDTn 225 Choanephora inf...
CEP14451     149 EAVLWCGLLEAIdk------tkHTTINIHPTlrhSIDRVWKDELetivsetpskfsktkpgqyqkKLAGTMLVQKWLDTd 222 Parasitella par...
XP_001485518 154 ENMIYAVLYTLKt--------dAVIIPMNAN---NMISFWLNRFvdkks-----------lgsnpKKLRIKLAFEWLARe 211 Meyerozyma guil...
XP_460052    166 ENMVYSTIWTLQqqhp--rlrdAMVMPMNAS---KMSHFWLNRFidrpq------------nsqtKKLRIQLFFNWLYGd 228 Debaryomyces ha...
SGZ46808     152 ENMIYAACEARGast-----hrVAVMPMNSN---KMVNFWISRFvnkssg---------mssahsKTLRTQLLFGWLSHp 214 Candida intermedia
XP_028890787 154 EHMIYAAYTARLdafp--sykdVPILATNSG---KMVNFWLNRFikkdsr---------mnltfsKKLRAGLFFGWLADs 219 [Candida] auris
XP_023467846 147 EGMIWYGLYETAnnik---rpdLDMIALSRQ---KVDAAWESELqraaaqtav----nnrttykkKQAAVRLVQNWLNEk 216 Rhizopus micros...
Feature 1                                                               #                        
1KCF_A       203 kil------------------fenEEALYKWNNGSrv----------------eFKKDDMADSALIASGWMRWQAQLKHY 248 Schizosaccharom...
XP_002175832 206 qlvl---------------klpngESQFQQFQKEKdnitk----------htpkKRQFDLADSALLGLAWIRWQYQLQTF 260 Schizosaccharom...
CEP24385     220 vqssdpkisv----dphfalqkfsGDYLSQVMNSSqshsr---------gtfgaEKGDDLVDALLHALAWIQWQANKTVM 286 Cyberlindnera j...
OBZ91534     226 tm-------------------vncNESFRAMYEQE-------------------KKKDDLSDCLMQALAWFRWEKYTKET 267 Choanephora inf...
CEP14451     223 tv-------------------vtcSDHFKQMYAQE-------------------KKKDDLSDCLVQALTWYQWESYSKTF 264 Parasitella par...
XP_001485518 212 dlrpfif----------hnslppdFSSLSTPNKSRallnal--------qmspkEKVDDLIDSLLYALTANEIVTNQKKL 273 Meyerozyma guil...
XP_460052    229 ndnapfv---------hsfnlperFGDFSSLHKSKylldql-------glpvvnNKIDDLIDSLLYGLTTHRSLQNQYSL 292 Debaryomyces ha...
SGZ46808     215 nhspfdlqlpslpldfaqlsyrkqTSALLQLLKFEtr----------------pKKVDDLVDCLLYNLMCLLQLRHHREL 278 Candida intermedia
XP_028890787 220 kaspi--------------dlleiSSRLPSDFGAStskkqtsyfldsfsfatkpGKADDLIDCMLYNIGAFQQLLHHFQL 285 [Candida] auris
XP_023467846 217 ens-----------------aiklDDRLKDMFREE-------------------PKKDDLSDCLLQALAWYKWQQFKQNY 260 Rhizopus micros...
Feature 1           
1KCF_A       249 RNF 251 Schizosaccharomyces pombe
XP_002175832 261 QSM 263 Schizosaccharomyces japonicus yFS275
CEP24385     287 KLE 289 Cyberlindnera jadinii
OBZ91534     268 CSL 270 Choanephora infundibulifera f. cucurbitarum
CEP14451     265 VQQ 267 Parasitella parasitica
XP_001485518 274 ARA 276 Meyerozyma guilliermondii ATCC 6260
XP_460052    293 LEV 295 Debaryomyces hansenii CBS767
SGZ46808     279 KQA 281 Candida intermedia
XP_028890787 286 QHQ 288 [Candida] auris
XP_023467846 261 VHL 263 Rhizopus microsporus ATCC 52813

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