Conserved Protein Domain Family
pesticin_lyz-like

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cd16904: pesticin_lyz-like 
pesticin C-terminal-like domain of uncharacterized proteins
This subfamily is composed of uncharacterized proteins containing a lysozyme-like domain similar to the C-terminal domain of pesticin. Pesticin (Pst) is an anti-bacterial toxin produced by Yersinia pestis that acts through uptake by the target related bacteria and the hydrolysis of peptidoglycan in the periplasm. Pst contains an N-terminal translocation domain, an intermediate receptor binding domain, and a phage-lysozyme like C-terminal activity domain. Bacteriocins such as pesticin are produced by gram-negative bacteria to attack related bacterial stains. Pst is transported to the periplasm via FyuA, an outer-membrane receptor of Y. pestis and E. coli, where it hydrolyzes peptidoglycan via the cleavage of N-acetylmuramic acid and C4 of N-acetylglucosamine. Disruption of the peptidoglycan layer renders the bacteria vulnerable to lysis via osmotic pressure. The pesticin C-terminal domain resembles the lysozyme-like family, which includes soluble lytic transglycosylases (SLT), goose egg-white lysozymes (GEWL), hen egg-white lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides.
Statistics
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PSSM-Id: 340390
Aligned: 21 rows
Threshold Bit Score: 177.07
Created: 4-Feb-2013
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
catalytic
Feature 1: catalytic residues [active site], 3 residue positions
Conserved feature residue pattern:E T DClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    #                          #     #                                  
ACL57498      60 ISKDAIDlLIAAEVSSEAAYRAKFSH-PIWPGGQ--SGVTIGIGYDVGTVspAVLAQDWsEELSRELIQRLAASCGVLGP 136  Methylobacteri...
EGX03898     675 FNTTLGVyRISKKSAEFILSWEAYVStPYVPDGDqsSGVTVGYGYDLGQQttSSARELLsAYYSNAQVERLLTAIGKKGD 754  Escherichia co...
AEF02161      62 LSQKGINlIVQHEISSKQYYEKRLTR-PTWPKGE--SGITIGIGYDLGYAskSQFQSDWqSLLSTFDMVKLTRVCGLKGQ 138  Alteromonas sp...
ACA72854      83 ISTSARSlIVACEVTSEANYRSKLQS-PIWPGGE--SGVTIGIGYDLGYTtaANFRSDWaRLLPEPTVVRLARCCGTKGR 159  Pseudomonas pu...
ABQ38295     335 ISLTGYQfIVRWETGGRSYYENVIKGrPIWPGYS--SGITIGCGWDLGYHtkQEFLSQWgAQLARADFDRLAPTIGFRTV 412  Bradyrhizobium...
ABP71304      45 ISERARSfIVGWETGGRAFYERVIKArPVWPEFA--SGITIGCGYDLGYHrpDEFRADWqGRLPGAAIERLSRTIGFRTD 122  Rhodobacter sp...
EAU54494      54 CSRTGLQqIARFEISSDAYYRRFLSH-PVWPKGQ--SGITIGIGYDLGYQtnLRFRKDWqGLIADSDLERLAAVTGVKGE 130  Mariprofundus ...
AFY66734      76 LSEKAIQlILEFEVGGGSSYYNRHLLhPIWPQAS--SGVTIGIGYDLGYNprHRFEKDW-LCLPEGDRIRLGDCCGLKGE 152  Geitlerinema s...
WP_027573941 376 ASEKACNlIVEYETGGRAYYENHYKKrPVWPKEA--SGITIGFGYDLGYVskDEFERDW-AQLPSDDLALLATTLGMRGK 452  Bradyrhizobium...
WP_023802824  61 VSDASFKlIVDYETGGKAFYELVIKSrPIWPKEA--SGVTIGFGYDLGYVtrDEFRSDW-AALPSGDRNLLETCVGFHSG 137  Mesorhizobium ...
Feature 1                                                                              
ACL57498     137 AAAHAIP---------KLRDITVPFETANRvfAARSVPQFVARTERALKNtrllhphCLGALVSLAYNRG 197  Methylobacterium nodulan...
EGX03898     755 NARAIVH---------GLVDITITKDKALDm-AMVLKQKYCQKVVDIYPQainlppdSAGAMLSLIYNRG 814  Escherichia coli STEC_MH...
AEF02161     139 AAKIHVS---------SLRSVTVPFDAAKHvfVHSSLPKYAQKTKSTFPGveylnadAQAALVSLVYNRG 199  Alteromonas sp. enrichme...
ACA72854     160 PASQKTR---------ELRDDKVGWTESNTqfDAYLRYVVGQTEDTFKNCshl-hldSFGALVSLIYNRG 219  Pseudomonas putida W619
ABQ38295     413 EPGRAAKvtqaqalirSLSDIVVPWSVAIDqfDNVKYPALIRQFYQALDNldrlhphCRGALLSLTFNRG 482  Bradyrhizobium sp. BTAi1
ABP71304     123 EPGRPAKvaqaralvrSLADIVIPWEVAIGqfDEGKMPKLVSQLYRSLDHldrlhphGRGALLSLVFNRG 192  Rhodobacter sphaeroides ...
EAU54494     131 AAHTALA---------DVADITIPLDAANQvyYTATLPAYAARTRKVYPGveklpadAQAMLLSLIYNRG 191  Mariprofundus ferrooxyda...
AFY66734     153 AAQRRIG---------SVKDIVVPWDIAWQvfQAVTIPRFYRDAAEAFPGllrlpldAQGALVSLVFNRG 213  Geitlerinema sp. PCC 7407
WP_027573941 453 KNSDDDMkaa----laKVKRVVIEWELAETvfRKATLPKFETLTSEALPNvamlsgdSFGALVSLTFNRG 518  Bradyrhizobium sp. WSM1743
WP_023802824 138 KDPATKMqml----laSVKHIIVAWAPSEAvfKAKTLPKFALMTQNALPNtgllsgdCFGTLVSLTFNRG 203  Mesorhizobium sp. L48C02...

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