4Y5U,4Y5W


Conserved Protein Domain Family
STAT6_DBD

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cd16850: STAT6_DBD 
Click on image for an interactive view with Cn3D
DNA-binding domain of Signal Transducer and Activator of Transcription 6 (STAT6)
This family consists of the DNA-binding domain (DBD) of the STAT6 proteins (Signal Transducer and Activator of Transcription 6, or Signal Transduction And Transcription 6). The DNA binding domain has an Ig-like fold. STAT6 is essential for the functional responses of T helper 2 (Th2) lymphocyte mediated by interleukins IL-4 and IL-13. STAT6 almost exclusively mediates the expression of genes activated by these cytokines; IL-4 signaling regulates the expression of genes involved in immune and anti-inflammatory responses. Abnormal production of IL-4 and IL-13 play important roles in the pathogenesis of asthma where upregulation of the Th2 response mediated by IL-4/IL-13 is a main characteristic. STAT6 has a unique extended transactivation domain, not found in other STATs, through which it recruits p300/CBP and NCoA-1, two coactivators needed for transcriptional activation by IL-4. STAT6 activation is linked to Kaposi's sarcoma-associated herpesvirus (KSHV)-associated cancers such as primary effusion lymphoma, a cancerous proliferation of B cells. Studies show that Meningeal solitary fibrous tumor (SFT) and hemangiopericytoma (HPC) represent a histopathologic spectrum linked by STAT6 nuclear expression and recurrent somatic fusions of the two genes, NGFI-A-binding protein 2 (NAB2) and STAT6 (NAB2-STAT6), similar to their soft tissue counterparts. It is associated with local recurrence and late distance metastasis of brain tumors to extracranial sites.
Statistics
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PSSM-Id: 341088
Aligned: 6 rows
Threshold Bit Score: 282.92
Created: 21-Nov-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA binding
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:STAT6 is a homodimer and binds DNA
  • Structure:4Y5W: Homo sapiens STAT6 binds DNA; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #  ##                                                                
4Y5U_A    164 FLVEKQPPQVLKTQTKFQAGVRFLLGlrflgapaKPPLVRADMVTEkqarelsvpqgpgagaesTGEIINNTVPLEnsip 243 human
4Y5W_A    164 FLVEKQPPQVLKTQTKFQAGVRFLLGlrflgapaKPPLVRADMVTEkqarelsvpqgpgagaesTGEIINNTVPLEnsip 243 human
P42226    273 FLVEKQPPQVLKTQTKFQAGVRFLLGlrflgapaKPPLVRADMVTEkqarelsvpqgpgagaesTGEIINNTVPLEnsip 352 human
AAH86272  268 LLVDKQPPQVLKTQSKFQASVNFLLGsrllnsspKMPVVRATIITEkkaqelyqtpigeswnegAGDIENGKSVLEiapn 347 African clawed frog
AAI62530  302 LVVEKQPPQVIKTQSKFSTTVRYLLGdkm--apgKPVLLKAQIITEaqarnlgq--qsvipnenVGELLNSTTILEhntt 377 zebrafish
EMP29380  268 FLVEKQPPQVLKTQTKFQASVRFLLGprllqpsaKPFVVKADMVTErqarelalggygnplsenTGEIVHNTVALEinst 347 green seaturtle
Feature 1                   #  #  ##   ##                                  ##  #              
4Y5U_A    244 gncCSALFKNLLLKKIKRCERKGTESVTEEKCAVLFSASftlgpgkLPIQLQALSlPLVVIVHGnQDNNAKATILWDNAF 323 human
4Y5W_A    244 gncCSALFKNLLLKKIKRCERKGTESVTEEKCAVLFSASftlgpgkLPIQLQALSlPLVVIVHGnQDNNAKATILWDNAF 323 human
P42226    353 gncCSALFKNLLLKKIKRCERKGTESVTEEKCAVLFSASftlgpgkLPIQLQALSlPLVVIVHGnQDNNAKATILWDNAF 432 human
AAH86272  348 sktCGAVFKNLLLKKIKRCERKGSESVTEEKCAVLFIAEfnlnsinTTFHIQALSlPVVVIVHGnQDNNAKATILWDNAF 427 African clawed frog
AAI62530  378 sknTCATFRNMSIRRIKRADRKGSESVTEEKFALLFTTDititggeRPYSLQSISlPVVVIVHGsQEINAMATIIWDCAF 457 zebrafish
EMP29380  348 satSCATFKNMLLKKIKRCERKGSESVTEEKCAVLFSTDitlgpgnLAFHLQALSlPIVVIVHGnQDNNAKATVLWDNAF 427 green seaturtle

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