5ZBU


Conserved Protein Domain Family
RING-H2_RNF13

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cd16796: RING-H2_RNF13 
Click on image for an interactive view with Cn3D
RING finger, H2 subclass, found in RING finger protein 13 (RNF13) and similar proteins
RNF13 is a widely expressed membrane-associated E3 ubiquitin-protein ligase that is functionally significant in the regulation of cancer development, muscle cell growth, and neuronal development. Its expression is developmentally regulated during myogenesis and is upregulated in various tumors. RNF13 negatively regulates cell proliferation through its E3 ligase activity. It functions as an important regulator of inositol-requiring transmembrane kinase/endonuclease IRE1alpha, mediating endoplasmic reticulum (ER) stress-induced apoptosis through the activation of the IRE1alpha-TRAF2-JNK signaling pathway. Moreover, RNF13 is involved in the regulation of the soluble N-ethylmaleimide-sensitive fusion protein attachment protein receptor (SNARE) complex via the ubiquitination of snapin, a SNAP25-interacting protein, which thereby controls synaptic function. In addition, RNF13 participates in regulating the function of satellite cells by modulating cytokine composition. RNF13 is evolutionarily conserved among many metazoans and contains an N-terminal signal peptide, a protease-associated (PA) domain, a transmembrane (TM) domain and a C-terminal C3H2C3-type RING-H2 finger domain followed by a putative PEST sequence.
Statistics
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PSSM-Id: 438450
Aligned: 7 rows
Threshold Bit Score: 106.285
Created: 23-Mar-2015
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:5ZBU; Homo sapiens RNF13 binds two Zn2+ ions
  • Comment:C3H2C3-type RING-H2 finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-H-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  #  #              # #  #  #           #  #       
5ZBU_A        16 KFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPS 74  human
NP_957338    230 KFKKGDSYDVCAICLDEYEEGERLRVLPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPS 288 zebrafish
NP_001083709 230 KFKKGDEYDVCAVCLDEYEEGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPS 288 African clawed frog
Q90972       230 KFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPS 288 chicken
XP_005997951 227 KFKKGDEYDVCAICLDEYEEGDKLRILPCAHAYHCKCVDPWLTKTKKTCPVCKQRVMRS 285 coelacanth
XP_014345082 227 KFKKGDEYDVCAICLDEYEEGDKLRILPCAHAYHCKCVDPWLTKTKKTCPVCKQRVMRS 285 coelacanth
O43567       230 KFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPS 288 human

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