Conserved Protein Domain Family
RING-HC_TRIM2

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cd16767: RING-HC_TRIM2 
RING finger, HC subclass, found in tripartite motif-containing protein 2 (TRIM2)
TRIM2, also known as RING finger protein 86 (RNF86), is an E3 ubiquitin-protein ligase that ubiquitinates the neurofilament light chain, a component of the intermediate filament in axons. Loss of function of TRIM2 results in early-onset axonal neuropathy. TRIM2 also plays a role in mediating the p42/p44 MAPK-dependent ubiquitination of the cell death-promoting protein Bcl-2-interacting mediator of cell death (Bim) in rapid ischemic tolerance. TRIM2 belongs to the C-VII subclass of the TRIM (tripartite motif)-NHL family that is defined by their N-terminal RBCC (RING, Bbox, and coiled coil) domains, including three consecutive zinc-binding domains, a C3HC4-type RING-HC finger, Bbox1 and Bbox2, and a coiled coil domain, as well as a NHL (named after proteins NCL-1, HT2A and Lin-41 that contain repeats folded into a six-bladed beta propeller) repeat domain positioned C-terminal to the RBCC domain.
Statistics
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PSSM-Id: 438423
Aligned: 6 rows
Threshold Bit Score: 111.647
Created: 28-Jul-2013
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other RING-HC fingers with bound zinc
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #  #           # #  #  #             #  #  
Q9C040        15 QIDKQFLICSICLERYKnPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQ 65  human
NP_001014393  15 QIDKQFLICSICLDRYNnPKVLPCLHTFCERCLQNYIPPHSLTLSCPVCRQ 65  zebrafish
NP_001086096  15 QIDKQFLICSICLDRYKnPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQ 65  African clawed frog
NP_001244243  15 QIDKQFLICSICLDRYKnPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQ 65  chicken
XP_007902181  15 QIDKQFLICSICLERYNiPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQ 65  elephant shark
XP_014349300  15 QIDKQFLICSICLDRYKnPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQ 65  coelacanth

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