Conserved Protein Domain Family
RING-HC_TIF1gamma

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cd16766: RING-HC_TIF1gamma 
RING finger, HC subclass, found in transcriptional inknown asiary factor 1 gamma (TIF1gamma)
TIF1gamma, also known as tripartite motif-containing 33 (TRIM33), ectodermin, RFG7, or PTC7, belongs to the C-VI subclass of the TRIM (tripartite motif) family of proteins that are defined by their N-terminal RBCC (RING, Bbox, and coiled coil) domains, including three consecutive zinc-binding domains, a C3HC4-type RING-HC finger, Bbox1 and Bbox2, and a coiled coil region, as well as a plant homeodomain (PHD), and a bromodomain (Bromo) positioned C-terminal to the RBCC domain. It is an E3-ubiquitin ligase that functions as a regulator of transforming growth factor beta (TGFbeta) signaling, inhibiting the Smad4-mediated TGFbeta response by interaction with Smad2/3 or ubiquitylation of Smad4. Moreover, TIF1gamma is an important regulator of transcription during hematopoiesis, as well as a key actor of tumorigenesis. Like other TIF1 proteins, TIF1gamma also contains an intrinsic transcriptional silencing function. It can control erythroid cell fate by regulating transcription elongation. It can bind to the anaphase-promoting complex/cyclosome (APC/C) and promotes mitosis.
Statistics
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PSSM-Id: 438422
Aligned: 5 rows
Threshold Bit Score: 118.426
Created: 22-Mar-2015
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structure of Homo sapiens TRIM28 with bound Zn2+ ions through its RING-HC finger
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #  #                # #  #  #                                               
Q9UPN9        121 LLDTCAVCQQSLQSRreaEPKLLPCLHSFCLRCLPEPERQLSVPipggsn-------------------------gdiqq 175  human
Q6E2N3        125 LLDTCAVCKQSLQNRd-cEPKLLPCLHSFCLKCIPQPDRKITMPvqgphg-------------------------qdtri 178  zebrafish
KGL78718        4 LLDTCAVCAQSLQSRreaEPKLLPCLHSFCRRCLPEPERQLSVPvpggangdiqqgerrpglarprgtvprgrpplgagl 83   Tinamus guttatus
Q56R14         93 LLDTCAVCKLSLQSRd-tEPKLLPCLHSFCRRCLPEPERQLSVPggtng---------------------------diqq 144  African clawe...
XP_014352378   66 LLDTCAVCKQSLQSRe-lEPKLLPCLHSFCRRCLPEPERQLSVPlpggsn-------------------------gdlqq 119  coelacanth
Feature 1              #  #    
Q9UPN9        176 vGVIRCPVCRQEC 188  human
Q6E2N3        179 vNVMRCTVCHQDY 191  zebrafish
KGL78718       84 fGVIRCPVCRQEC 96   Tinamus guttatus
Q56R14        145 vGVIRCLVCRQEC 157  African clawed frog
XP_014352378  120 vGVIRCPVCRQEC 132  coelacanth

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