Conserved Protein Domain Family
RING-HC_TRIM59_C-V

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cd16763: RING-HC_TRIM59_C-V 
RING finger, HC subclass, found in tripartite motif-containing protein 59 (TRIM59) and similar proteins
TRIM59, also known as RING finger protein 104 (RNF104) or tumor suppressor TSBF-1, is a putative E3 ubiquitin-protein ligase that functions as a novel multiple cancer biomarker for immunohistochemical detection of early tumorigenesis. It is upregulated in gastric cancer and promotes gastric carcinogenesis by interacting with and targeting the P53 tumor suppressor for its ubiquitination and degradation. It also acts as a novel accessory molecule involved in cytotoxicity of BCG-activated macrophages (BAM). Moreover, TRIM59 may serve as a multifunctional regulator for innate immune signaling pathways. It interacts with ECSIT and negatively regulates nuclear factor-kappaB (NF- kappa B) and interferon regulatory factor (IRF)-3/7-mediated signal pathways. TRIM59 belongs to the C-V subclass of the TRIM (tripartite motif) family of proteins that are defined by an N-terminal RBCC (RING, Bbox, and coiled coil) domain, including three consecutive zinc-binding domains, a C3HC4-type RING-HC finger, Bbox1 and Bbox2, and a coiled coil region. In addition, TRIM59 contains a C-terminal transmembrane domain.
Statistics
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PSSM-Id: 438419
Aligned: 4 rows
Threshold Bit Score: 116.164
Created: 3-May-2013
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other RING-HC fingers with bound zinc
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #  #           # #  #  #                       #  # 
Q8IWR1         5 EEELTCPICYSIFEDPRVLPCSHTFCRNCLENILqasgnfy-iwrplriPLKCPNCR 60  human
Q5ZMD4         5 EEELTCSICYSLFEDPRVLPCSHTFCRSCLEGVIqlssnfs-iwrplrvPLKCPNCR 60  chicken
CAF97398       5 EEDLTCSVCYSLFSDPRVLPCSHTFCKNCLDNLLkvsndnsslwrplrpPLKCPNCR 61  spotted green pufferfish
XP_007886743  22 EEDLTCSVCYSIFEDPRVLPCSHTFCRTCLENIIqgsgnfs-vwrplrfPLKCPTCR 77  elephant shark

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