3RPG,2CKL,4R8P,2H0D


Conserved Protein Domain Family
RING-HC_PCGF4

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cd16736: RING-HC_PCGF4 
Click on image for an interactive view with Cn3D
RING finger found in polycomb group RING finger protein 4 (PCGF4) and similar proteins
PCGF4, also known as polycomb complex protein BMI-1 (B cell-specific Moloney murine leukemia virus integration site 1) or RING finger protein 51 (RNF51), is one of six PcG RING finger (PCGF) homologs (PCGF1/NSPc1, PCGF2/Mel-18, PCGF3, PCGF4/BMI1, PCGF5, and PCGF6/MBLR). It serves as the core component of a canonical Polycomb repressive complex 1 (PRC1), which is composed of a chromodomain-containing protein (CBX2, CBX4, CBX6, CBX7 or CBX8) and a Polyhomeotic protein (PHC1, PHC2, or PHC3), and plays important roles in chromatin compaction and H2AK119 monoubiquitination. PCGF4 associates with the Runx1/CBFbeta transcription factor complex to silence target genes in a PRC2-independent manner. Moreover, PCGF4 is expressed in the hair cells and supporting cells. It can regulate cell survival by controlling mitochondrial function and reactive oxygen species (ROS) level in thymocytes and neurons, thus having an important role in the survival and sensitivity to ototoxic drug of auditory hair cells. Furthermore, PCGF4 controls memory CD4 T-cell survival through direct repression of Noxa gene in an Ink4a- and Arf-independent manner. It is required in neurons to suppress p53-induced apoptosis via regulating the antioxidant defensive response, and also involved in the tumorigenesis of various cancer types. PCGF4 contains a C3HC4-type RING-HC finger.
Statistics
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PSSM-Id: 438394
Aligned: 13 rows
Threshold Bit Score: 182.136
Created: 3-May-2013
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteheterodimer
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:3RPG; Homo sapiens PCGF4 (Bmi1) binds two Zn2+ ions thorugh its RING-HC finger.
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                     #  #            # #  #  #          #  #                            
3RPG_B         5 TRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84  human
2CKL_A         5 TRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84  house mouse
4R8P_K         6 TRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 85  human
2H0D_A         1 TRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 80  human
Q5SDR3         5 TRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84  chicken
Q91648         5 TRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRADKTLQDIVYKLVP 84  African clawed ...
P35226         5 TRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84  human
XP_006002458   5 TRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLHIRSDKTLQDIVYKLVP 84  coelacanth
XP_006817085   5 TKLKMTELNPHLMCVLCGGYFIDATTIIECLHSFCRTCIVRYLETSKYCPICDTQVHKTRPLLNIRSDRTLQSIVYKMVP 84  Saccoglossus ko...
XP_007887986 259 TRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 338 elephant shark
Q7T3E6         5 TRIKITELNPHLMCVLCGGYFIDATTIVECLHSFCKMCIVRYLETSKYCPICDVQVHKTKPLLNIRSDKTLQDIVYKLVP 84  zebrafish
Q8JIR0         5 TRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKMCIVRYLETSKYCPICDVQVHKTKPLLNIRSDKTLQDIVYKLVP 84  zebrafish
Q640D5         5 TRIKITELNPHLMCVLCGGYFIDAATIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRADKTLQDIVYKLVP 84  African clawed ...
Feature 1                         
3RPG_B        85 GLFKNEMKRRRDFYAAH 101 human
2CKL_A        85 GLFKNEMKRRRDFYAAH 101 house mouse
4R8P_K        86 GLFKNEMKRRRDFYAAH 102 human
2H0D_A        81 GLFKNEMKRRRDFYAAH 97  human
Q5SDR3        85 GLFKNEMKRRRDFYAAH 101 chicken
Q91648        85 GLFKGEMKRRRDFYAAH 101 African clawed frog
P35226        85 GLFKNEMKRRRDFYAAH 101 human
XP_006002458  85 GLFKNEMKRRRDFYAAH 101 coelacanth
XP_006817085  85 GLFRDEMKRRRDFYAGN 101 Saccoglossus kowalevskii
XP_007887986 339 GLFKDEMKRRRDFYAAH 355 elephant shark
Q7T3E6        85 GLFKNEMKRRRDFYAEH 101 zebrafish
Q8JIR0        85 GLFKNEMKRRRDFYAEH 101 zebrafish
Q640D5        85 GLFKGEMKRRRDFYAAH 101 African clawed frog

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