Conserved Protein Domain Family
RING-HC_RGLG_plant

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cd16729: RING-HC_RGLG_plant 
RING finger, HC subclass, found in RING domain ligase RGLG1, RGLG2 and similar proteins from plant
RGLG1 is a ubiquitously expressed E3 ubiquitin-protein ligase that interacts with UBC13 and, together with UBC13, catalyzes the formation of K63-linked polyubiquitin chains, which is involved in DNA damage repair. RGLG1 mediates the formation of canonical, K48-linked polyubiquitin chains that target proteins for degradation. It also regulates apical dominance by acting on the auxin transport proteins abundance. RGLG1 has overlapping functions with its closest sequelog, RGLG2. They both function as RING E3 ligases that interact with ethylene response factor 53 (ERF53) in the nucleus and negatively regulate the plant drought stress response. Members of this subfamily contain a Von Willebrand factor type A (vWA) domain and a C3HC4-type RING-HC finger.
Statistics
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PSSM-Id: 438389
Aligned: 5 rows
Threshold Bit Score: 106.025
Created: 1-Dec-2015
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other RING-HC fingers with bound zinc
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #  #          # #  #  #      #  #           
Q9SS90       442 DIQLCPICLSNpKNMAFGCGHQTCCECGPDLKVCPICRAPIQTRIKLY 489 thale cress
EFJ35268     365 ESQVCPICLTErKDLAFGCGHQTCRECGASLTNCPICRQEISTRIRLY 412 Selaginella moellendorffii
ABK24359     376 DAQMCPICLMNaKDLAFGCGHQTCYDCGQNIVTCPICRSDITTRIKLY 423 Sitka spruce
Q9LY87       421 DNQLCPICLSNpKDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIKLY 468 thale cress
XP_024363471 418 EDMECPVCLLEnKDMAFNCGHQTCGQCAQSLTHCPTCRQPITTRIRLY 465 Physcomitrium patens

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