Conserved Protein Domain Family
RING-HC_MIB1_rpt3

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cd16727: RING-HC_MIB1_rpt3 
third RING finger, HC subclass, found in mind bomb 1 (MIB1) and similar proteins
MIB1, also known as DAPK-interacting protein 1 (DIP-1) or zinc finger ZZ type with ankyrin repeat domain protein 2, is a large, multi-domain E3 ubiquitin-protein ligase that promotes ubiquitination of the cytoplasmic tails of Notch ligands, and thus plays an essential role in controlling metazoan development by Notch signaling. It is also involved in Wnt/beta-catenin signaling and nuclear factor (NF)-kappaB signaling, and has been implicated in innate immunity, neuronal function, genomic stability, and cell death. MIB1 contains an MZM region with two Mib-Herc2 domains flanking a ZZ zinc finger, a REP region including two tandem Mib repeats, an ANK region that spans ankyrin repeats, and a RNG region consisting of three C3HC4-type RING-HC fingers. This model corresponds to the third RING-HC finger.
Statistics
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PSSM-Id: 438387
Aligned: 21 rows
Threshold Bit Score: 74.3999
Created: 2-May-2013
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other RING-HC fingers with bound zinc
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #  #          # #  #  #      #  #           
Q86YT6        961 TMCPVCLDRLKNMIFLCGHGTCQLCGDRMsECPICRKAIERRILLY 1006 human
Q9VUX2       1181 TMCPVCFDRIKNMVFLCGHGTCQMCGDQIeGCPICRKTVEKRILLF 1226 fruit fly
CBY10377      959 VICVICLDNVMNMVFLCGHGSCQMCGDRCsDCPICRKRIERKILLY 1004 Oikopleura dioica
EDO44606      146 TMCPVCMDRRKNLIFLCGHGTCQLCGDRMqECPMCRKTVERRILLF 191  starlet sea anemone
XP_013418704  954 TCCPVCMDRLKNMIFLCGHGTCQLCGDRMsECPICRKGVEKRILLY 999  Lingula anatina
KFD54936      984 TACPVCFDRTKNMVFLCGHGCCQLCGDRItECPICRRRIDKKILTY 1029 pig whipworm
XP_019638777  990 TMCPVCLDRLKNMIFLCGHGTCQLCGDRMtECPICRKPVEKRVLLY 1035 Belcher's lancelet
PVD22714      953 TCCPVCMDRLKNMIFLCGHGACQLCGDRLnECPICRKSVEKRILLY 998  Pomacea canaliculata
PIK53057      349 TMCPVCLDRIKNMIFLCGHGTCQLCGDRMsECPICRKPVEKRVLLY 394  Japanese sea cucumber
PAA50284     1129 TSCPVCLDRLKNMVFLCGHGTCQHCGDQMtVCPICRKPIERRVLVY 1174 Macrostomum lignano

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