Conserved Protein Domain Family
RING-HC_MIB1_rpt1

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cd16724: RING-HC_MIB1_rpt1 
first RING finger, HC subclass, found in mind bomb 1 (MIB1) and similar proteins
MIB1, also known as DAPK-interacting protein 1 (DIP-1) or zinc finger ZZ type with ankyrin repeat domain protein 2, is a large, multi-domain E3 ubiquitin-protein ligase that promotes ubiquitination of the cytoplasmic tails of Notch ligands, and thus plays an essential role in controlling metazoan development by Notch signaling. It is also involved in Wnt/beta-catenin signaling and nuclear factor (NF)-kappaB signaling, and has been implicated in innate immunity, neuronal function, genomic stability, and cell death. MIB1 contains an MZM region with two Mib-Herc2 domains flanking a ZZ zinc finger, a REP region including two tandem Mib repeats, an ANK region that spans ankyrin repeats, and a RNG region consisting of three C3HC4-type RING-HC fingers. This model corresponds to the first RING-HC finger.
Statistics
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PSSM-Id: 438384
Aligned: 13 rows
Threshold Bit Score: 60.1924
Created: 2-May-2013
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other RING-HC fingers with bound zinc
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #  #           # #   #  #      #  # 
Q86YT6        817 EECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICK 854  human
Q6GNY1        818 EECMVCSDLKRDTLFGPCGHIATCSLCSPRVKKCLLCK 855  African clawed frog
Q804S5        815 EECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICK 852  zebrafish
ELU05910       85 EECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLMCK 122  Capitella sp. I Grassle & Grassle, 1976
EFX89996      210 DECMVCSDLKRDTLFGPCGHVNCCSACAPRVKKCLVCK 247  common water flea
Q9VUX2        968 DECLVCSDAKRDTVFKPCGHVSCCETCAPRVKKCLICR 1005 fruit fly
EDO44606       12 DECMVCSDNKRDTLFGPCGHVATCSLCSPRVKKCLMCK 49   starlet sea anemone
XP_006814876  777 EECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLLCK 814  Saccoglossus kowalevskii
XP_007899833  817 EECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICK 854  elephant shark
XP_009862485  920 NECMICSDSPRDTILEPCGHSLACASCSDRIKKCLLCK 957  vase tunicate
EEC11167       78 EDCIVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLMCK 115  black-legged tick
XP_013418704  820 EECMVCSDMKRDTLFGPCCHIATCSLCSPRVKKCLMCK 857  Lingula anatina
XP_014343721  755 EECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICK 792  coelacanth

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