Conserved Protein Domain Family
RING-HC_LNX4

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cd16719: RING-HC_LNX4 
RING finger, HC subclass, found in ligand of numb protein X 4 (LNX4)
LNX4, also known as PDZ domain-containing RING finger protein 4 (PDZRN4), or SEMACAP3-like protein (SEMCAP3L), is an E3 ubiquitin-protein ligase responsible for the ubiquitination and degradation of Numb, a component of the Notch signaling pathway that functions in the specification of cell fates during development and is known to control cell numbers during neurogenesis in vertebrates. LNX4 contains an N-terminal C3HC4-type RING-HC finger, two PDZ domains, and a C-terminal LNX3 homology (LNX3H) domain.
Statistics
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PSSM-Id: 438379
Aligned: 5 rows
Threshold Bit Score: 85.7498
Created: 3-May-2013
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding siteZn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment:RING-HC finger (C3HC4-type)
  • Comment:consensus: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C,X is any amino acid and the number of X residues varies in different fingers.
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.
  • Comment:Based on the structural evidence that Mus musculus RNF146 (4QPL) binds two Zn2+ ions through its RING-HC finger.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #  #           # #  #  #          #   #        
Q6ZMN7         12 VDPALECKLCGQVLEEPLCTPCGHVFCASCLLPWAVRRRRCPLQCQPLAPGEL 64   human
XP_006001461   12 VDPDFKCKLCSKVLEEPLSTPCGHVFCAGCLLPWAVQQRLCPLQCQPISAKEL 64   coelacanth
XP_015137898   12 VAAELQCKLCGRVLEEPLSTPCGHVFCAGCLLPWAARRRRCPLRCRPLAAAEL 64   chicken
XP_030072613   52 VDANLKCKLCSKVLEEPLSTPCGHVFCAGCLLPWAVQKRLCPLQCQPISAKEL 104  Microcaecilia unicolor
RXM32060       12 VDPDLKCKLCTKVLEEPLSTPCGHVFCAGCLLPWAVQQRLCPLQCQSICAKEL 64   sterlet

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