Conserved Protein Domain Family
RING-HC_LNX3

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cd16718: RING-HC_LNX3 
RING finger, HC subclass, found in ligand of numb protein X 3 (LNX3)
LNX3, also known as PDZ domain-containing RING finger protein 3 (PDZRN3), or Semaphorin cytoplasmic domain-associated protein 3 (SEMACAP3), is an E3 ubiquitin-protein ligase that was first identified as a Semaphorin-binding partner. It is also responsible for the ubiquitination and degradation of Numb, a component of the Notch signaling pathway that functions in the specification of cell fates during development and is known to control cell numbers during neurogenesis in vertebrates. LNX3 acts as a negative regulator of osteoblast differentiation by inhibiting Wnt-beta-catenin signaling. LNX3 also plays an important role in neuromuscular junction formation. It interacts with and ubiquitinates the muscle specific tyrosine kinase (MuSK), thus promoting its endocytosis and negatively regulating the cell surface expression of this key regulator of postsynaptic assembly. LNX3 contains an N-terminal C3HC4-type RING-HC finger, two PDZ domains, and a C-terminal LNX3 homology (LNX3H) domain.
Statistics
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PSSM-Id: 438378
Aligned: 6 rows
Threshold Bit Score: 116.237
Created: 3-May-2013
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding siteZn binding site
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment:RING-HC finger (C3HC4-type)
  • Comment:consensus: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C,X is any amino acid and the number of X residues varies in different fingers.
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.
  • Comment:Based on the structural evidence that Mus musculus RNF146 (4QPL) binds two Zn2+ ions through its RING-HC finger.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #  #           # #  #  #          #   #  
Q9UPQ7         12 VDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRG 58   human
NP_001090510   12 VDPDFKCNLCNRVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPVKCQR 58   African clawed frog
NP_001243321   12 VDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQSSCPVKCQR 58   zebrafish
XP_007892910   12 VDPDLQCNLCNKVLEDPLTTPCGHVFCASCVLPWVVQQGICPVKCQR 58   elephant shark
XP_014345690   12 VDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPVKCQR 58   coelacanth
GCF51123       12 VDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPVKCQR 58   Paroedura picta

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