6HPR,3EB5,3T6P,4AUQ


Conserved Protein Domain Family
RING-HC_BIRC2_3_7

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cd16713: RING-HC_BIRC2_3_7 
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RING finger, HC subclass, found in apoptosis protein c-IAP1, c-IAP2, livin, and similar proteins
The cellular inhibitor of apoptosis protein c-IAPs function as ubiquitin E3 ligases that mediate the ubiquitination of substrates involved in apoptosis, nuclear factor-kappaB (NF-kappaB) signaling, and oncogenesis. Unlike other IAPs, such as XIAP, c-IAPs exhibit minimal binding to caspases and may not play an important role in the inhibition of these proteases. c-IAP1, also known as baculoviral IAP repeat-containing protein BIRC2, IAP-2, RING finger protein 48, or TNFR2-TRAF-signaling complex protein 2, is a potent regulator of the tumor necrosis factor (TNF) receptor family and NF-kappaB signaling pathways in the cytoplasm. It can also regulate E2F1 transcription factor-mediated control of cyclin transcription in the nucleus. c-IAP2, also known as BIRC3, IAP-1, apoptosis inhibitor 2 (API2), or IAP homolog C, also influences ubiquitin-dependent pathways that modulate innate immune signalling by activation of NF-kappaB. c-IAPs contain three N-terminal baculoviral IAP repeat (BIR) domains that enable interactions with proteins, a ubiquitin-association (UBA) domain that is responsible for the binding of polyubiquitin (polyUb), a caspase activation and recruitment domain (CARD) that serves as a protein interaction surface, and a C3HC4-type RING-HC finger at the carboxyl terminus that is required for ubiquitin ligase activity. Livin, also known as baculoviral IAP repeat-containing protein 7 (BIRC7), kidney inhibitor of apoptosis protein (KIAP), melanoma inhibitor of apoptosis protein (ML-IAP), or RING finger protein 50, was identified as the melanoma IAP. It plays crucial roles in apoptosis, cell proliferation, and cell cycle control. Its anti-apoptotic activity is regulated by the inhibition of caspase-3, -7, and -9. Its E3 ubiquitin-ligase-like activity promotes degradation of Smac/DIABLO, a critical endogenous regulator of all IAPs. Unlike other family members, mammalian livin contains a single BIR domain and a C3HC4-type RING-HC finger. The UBA domain can be detected in non-mammalian homologs of livin.
Statistics
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PSSM-Id: 438373
Aligned: 16 rows
Threshold Bit Score: 80.5949
Created: 2-May-2013
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:3T6P; Homo sapiens BIRC2 binds two Zn2+ ions through its RING-HC finger, contacts at 4A.
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 #  #           # #   #  #      #  #             
6HPR_A         9 LRRLQEERTCKVCMDKEVSVVFIPCGHLvVCQECAPSLRKCPICRGiIKGTVRTFLS 65  human
3EB5_A        18 LRRLQEERTCKVCMDKEVSIVFIPCGHLvVCKDCAPSLRKCPICRStIKGTVRTFLS 74  human
3T6P_A       289 LRRLQEERTCKVCMDKEVSVVFIPCGHLvVCQECAPSLRKCPICRGiIKGTVRTFLS 345 human
4AUQ_B         7 LRRLQEERTCKVCLDRAVSIVFVPCGHL-VCAECAPGLQLCPICRApVRSRVRTFLS 62  human
Q13489       548 LRRLQEERTCKVCMDKEVSIVFIPCGHLvVCKDCAPSLRKCPICRStIKGTVRTFLS 604 human
Q90660       555 LRRLQEERTCKVCMDKEVSIVFIPCGHLvVCKECAPSLRKCPICRGtIKGTVRTFLS 611 chicken
Q96CA5       243 LRRLQEERTCKVCLDRAVSIVFVPCGHL-VCAECAPGLQLCPICRApVRSRVRTFLS 298 human
CAE47763     598 LRRLQEERTCKVCMDKEVNIVFIPCGHLvVCKECAPSLRKCPICRGmVKGTVRTFLS 654 zebrafish
A9JTP3       309 LRQLKEERMCKVCMDNDVSMVFVPCGHLvVCTECAPNLRHCPICRAaIRGSVRAFMS 365 tropical clawed frog
XP_014342410 461 LRRLQEERTCKVCMDKEVSIVFIPCGHLvVCQECAPSLVRCPICRStIRGSVRTFMS 517 coelacanth

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